Aliases for RPSAP44 Gene

Aliases for RPSAP44 Gene

  • Ribosomal Protein SA Pseudogene 44 2 3 5
  • RPSA_16_706 3
  • RPSAP44 5

External Ids for RPSAP44 Gene

Previous GeneCards Identifiers for RPSAP44 Gene

  • GC06P054596
  • GC06P054492

Summaries for RPSAP44 Gene

GeneCards Summary for RPSAP44 Gene

RPSAP44 (Ribosomal Protein SA Pseudogene 44) is a Pseudogene.

Additional gene information for RPSAP44 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP44 Gene

Genomics for RPSAP44 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP44 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J054617 Enhancer 0.6 Ensembl ENCODE 0.4 -6.7 -6667 1 JUND CTCF FOS EP300 piR-32285-081 RPSAP44 HSALNG0050730 FAM83B TINAG
GH06J054614 Enhancer 0.3 Ensembl ENCODE 0.4 -9.5 -9526 0.8 piR-32285-081 RPSAP44 HSALNG0050730 FAM83B TINAG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP44 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP44 Gene

Latest Assembly
chr6:54,624,527-54,625,523
(GRCh38/hg38)
Size:
997 bases
Orientation:
Plus strand

Previous Assembly
chr6:54,489,325-54,490,321
(GRCh37/hg19 by Entrez Gene)
Size:
997 bases
Orientation:
Plus strand

chr6:54,489,403-54,490,286
(GRCh37/hg19 by Ensembl)
Size:
884 bases
Orientation:
Plus strand

Genomic View for RPSAP44 Gene

Genes around RPSAP44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP44 Gene

Proteins for RPSAP44 Gene

Post-translational modifications for RPSAP44 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP44 Gene

Domains & Families for RPSAP44 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP44 Gene

Function for RPSAP44 Gene

Phenotypes From GWAS Catalog for RPSAP44 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP44 Gene

Localization for RPSAP44 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP44 Gene

Pathways & Interactions for RPSAP44 Gene

PathCards logo

SuperPathways for RPSAP44 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP44 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP44 Gene

Drugs & Compounds for RPSAP44 Gene

No Compound Related Data Available

Transcripts for RPSAP44 Gene

mRNA/cDNA for RPSAP44 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP44 Gene

No ASD Table

Relevant External Links for RPSAP44 Gene

GeneLoc Exon Structure for
RPSAP44

Expression for RPSAP44 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP44 Gene

mRNA differential expression in normal tissues according to GTEx for RPSAP44 Gene

This gene is overexpressed in Muscle - Skeletal (x17.4), Nerve - Tibial (x4.8), and Brain - Nucleus accumbens (basal ganglia) (x4.2).
genes like me logo Genes that share expression patterns with RPSAP44: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP44 Gene

Orthologs for RPSAP44 Gene

Evolution for RPSAP44 Gene

ENSEMBL:
Gene Tree for RPSAP44 (if available)
TreeFam:
Gene Tree for RPSAP44 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPSAP44

No data available for Orthologs for RPSAP44 Gene

Paralogs for RPSAP44 Gene

No data available for Paralogs for RPSAP44 Gene

Variants for RPSAP44 Gene

Additional Variant Information for RPSAP44 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP44
Leiden Open Variation Database (LOVD)
RPSAP44

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP44 Gene

Disorders for RPSAP44 Gene

No disorders were found for RPSAP44 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP44 Gene

Publications for RPSAP44 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PMID: 17903295) Lunetta KL … Murabito JM (BMC medical genetics 2007) 40

No data available for Mastermind for RPSAP44 Gene

Products for RPSAP44 Gene

Sources for RPSAP44 Gene