Aliases for RPSAP4 Gene

Aliases for RPSAP4 Gene

  • Ribosomal Protein SA Pseudogene 4 2 3 5
  • Laminin Receptor 1 Pseudogene 4 2 3
  • RPSA_27_1403 3
  • LAMR1P4 3
  • RPSAP4 5

External Ids for RPSAP4 Gene

Previous HGNC Symbols for RPSAP4 Gene

  • LAMR1P4

Previous GeneCards Identifiers for RPSAP4 Gene

  • GC14P094263
  • GC14P095193

Summaries for RPSAP4 Gene

GeneCards Summary for RPSAP4 Gene

RPSAP4 (Ribosomal Protein SA Pseudogene 4) is a Pseudogene.

Additional gene information for RPSAP4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP4 Gene

Genomics for RPSAP4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J093953 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.1 -766.2 -766212 13.2 ZBTB10 BCL11A SP1 MXD4 FEZF1 CEBPA NR2C1 ZNF217 POLR2A BHLHE40 BTBD7 SERPINA1 CCDC197 IFI27L2 IFI27 RPSAP4 FAM181A-AS1 ASB2 DDX24 lnc-CCDC197-2
GH14J094768 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +43.3 43289 2.2 ZNF341 CTBP1 SIN3A KLF9 YY1 SP2 KLF16 CBX8 SMARCE1 POLR2A ENSG00000285205 GSC GSC-DT HSALNG0103390 SCARNA13 SNHG10 DICER1 RPSAP4 SERPINA3
GH14J094748 Enhancer 0.7 ENCODE 0.3 +22.8 22767 0.2 ZNF217 CTCF ELF1 RAD21 YY1 SMC3 ZNF2 FOXA1 PKNOX1 GLIS1 GSC RPSAP4 SERPINA3
GH14J094702 Enhancer 0.6 Ensembl 0.3 -23.3 -23311 0.6 CTBP1 ZSCAN23 DPF2 ZFP36 ZMYM3 ESRRA FOS MTA1 SMARCA5 ZKSCAN1 HSALNG0103387 piR-35674-155 SNHG10 GSC SCARNA13 RPSAP4 SERPINA3
GH14J094707 Enhancer 0.4 ENCODE 0.4 -18.5 -18483 0.1 CTCF SP1 RAD21 GSC piR-35674-155 RPSAP4 SERPINA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP4 Gene

Latest Assembly
chr14:94,726,212-94,727,245
(GRCh38/hg38)
Size:
1,034 bases
Orientation:
Plus strand

Previous Assembly
chr14:95,192,549-95,193,582
(GRCh37/hg19 by Entrez Gene)
Size:
1,034 bases
Orientation:
Plus strand

chr14:95,192,625-95,193,512
(GRCh37/hg19 by Ensembl)
Size:
888 bases
Orientation:
Plus strand

Genomic View for RPSAP4 Gene

Genes around RPSAP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP4 Gene

Proteins for RPSAP4 Gene

Post-translational modifications for RPSAP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP4 Gene

Domains & Families for RPSAP4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP4 Gene

Function for RPSAP4 Gene

Phenotypes From GWAS Catalog for RPSAP4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP4 Gene

Localization for RPSAP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP4 Gene

Pathways & Interactions for RPSAP4 Gene

PathCards logo

SuperPathways for RPSAP4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP4 Gene

Drugs & Compounds for RPSAP4 Gene

No Compound Related Data Available

Transcripts for RPSAP4 Gene

mRNA/cDNA for RPSAP4 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP4 Gene

No ASD Table

Relevant External Links for RPSAP4 Gene

GeneLoc Exon Structure for
RPSAP4

Expression for RPSAP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP4 Gene

genes like me logo Genes that share expression patterns with RPSAP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP4 Gene

Orthologs for RPSAP4 Gene

Evolution for RPSAP4 Gene

ENSEMBL:
Gene Tree for RPSAP4 (if available)
TreeFam:
Gene Tree for RPSAP4 (if available)

No data available for Orthologs for RPSAP4 Gene

Paralogs for RPSAP4 Gene

No data available for Paralogs for RPSAP4 Gene

Variants for RPSAP4 Gene

Additional Variant Information for RPSAP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP4 Gene

Disorders for RPSAP4 Gene

No disorders were found for RPSAP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP4 Gene

Publications for RPSAP4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. (PMID: 15014966) Namciu SJ … Fournier RE (Mammalian genome : official journal of the International Mammalian Genome Society 2004) 3

Products for RPSAP4 Gene

Sources for RPSAP4 Gene