Aliases for RPSAP39 Gene

Aliases for RPSAP39 Gene

  • Ribosomal Protein SA Pseudogene 39 2 3 5
  • RPSA_12_495 3
  • RPSAP39 5

External Ids for RPSAP39 Gene

Previous GeneCards Identifiers for RPSAP39 Gene

  • GC04P081302
  • GC04P081083

Summaries for RPSAP39 Gene

GeneCards Summary for RPSAP39 Gene

RPSAP39 (Ribosomal Protein SA Pseudogene 39) is a Pseudogene.

Additional gene information for RPSAP39 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP39 Gene

Genomics for RPSAP39 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J080162 Enhancer 0.3 ENCODE 600.7 +1.0 1041 0.1 NRF1 CHAMP1 RPSAP39 piR-61223-015 PRDM8 ENSG00000248719 ANTXR2 piR-39416-035
GH04J080123 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -34.9 -34856 4.6 ARHGAP35 CTCF ZNF512 LEF1 IKZF1 JUND PRDM1 MTA2 PKNOX1 ZNF24 ANTXR2 lnc-ANTXR2-3 PRDM8 ENSG00000248719 RPSAP39
GH04J080137 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.5 -19511 8.1 RFX1 LEF1 IKZF1 JUND DDX20 MTA2 PKNOX1 MTA1 NR2C1 BRD9 PRDM8 ANTXR2 RPSAP39 lnc-ANTXR2-3
GH04J080134 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.2 -25245 2.1 ZNF512 RFX1 LEF1 IKZF1 MTA2 PHF21A PKNOX1 MTA1 BRD9 DPF2 PRDM8 ENSG00000248719 ANTXR2 lnc-ANTXR2-3 RPSAP39
GH04J080154 Enhancer 0.7 Ensembl ENCODE 0.4 -6.0 -6048 2 POLR2A TCF7L2 ZNF316 MAFK RCOR1 YY1 SMARCA4 CHD2 GATA2 EZH2 PRDM8 ENSG00000248719 ANTXR2 RPSAP39 lnc-ANTXR2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP39 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP39 Gene

Genomic Locations for RPSAP39 Gene
chr4:80,161,053-80,162,081
(GRCh38/hg38)
Size:
1,029 bases
Orientation:
Plus strand
chr4:81,082,207-81,083,235
(GRCh37/hg19)
Size:
1,029 bases
Orientation:
Plus strand

Genomic View for RPSAP39 Gene

Genes around RPSAP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP39 Gene

Proteins for RPSAP39 Gene

Post-translational modifications for RPSAP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP39 Gene

Domains & Families for RPSAP39 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP39 Gene

Function for RPSAP39 Gene

Phenotypes From GWAS Catalog for RPSAP39 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP39 Gene

Localization for RPSAP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP39 Gene

Pathways & Interactions for RPSAP39 Gene

PathCards logo

SuperPathways for RPSAP39 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP39 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP39 Gene

Drugs & Compounds for RPSAP39 Gene

No Compound Related Data Available

Transcripts for RPSAP39 Gene

mRNA/cDNA for RPSAP39 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP39 Gene

No ASD Table

Relevant External Links for RPSAP39 Gene

GeneLoc Exon Structure for
RPSAP39

Expression for RPSAP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP39 Gene

genes like me logo Genes that share expression patterns with RPSAP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP39 Gene

Orthologs for RPSAP39 Gene

Evolution for RPSAP39 Gene

ENSEMBL:
Gene Tree for RPSAP39 (if available)
TreeFam:
Gene Tree for RPSAP39 (if available)

No data available for Orthologs for RPSAP39 Gene

Paralogs for RPSAP39 Gene

No data available for Paralogs for RPSAP39 Gene

Variants for RPSAP39 Gene

Additional Variant Information for RPSAP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP39 Gene

Disorders for RPSAP39 Gene

No disorders were found for RPSAP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP39 Gene

Publications for RPSAP39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP39 Gene

Products for RPSAP39 Gene

Sources for RPSAP39 Gene