Aliases for RPSAP38 Gene

Aliases for RPSAP38 Gene

  • Ribosomal Protein SA Pseudogene 38 2 3 5
  • RPSA_9_557 3
  • RPSAP38 5

External Ids for RPSAP38 Gene

Previous GeneCards Identifiers for RPSAP38 Gene

  • GC05M041989
  • GC05M041990

Summaries for RPSAP38 Gene

GeneCards Summary for RPSAP38 Gene

RPSAP38 (Ribosomal Protein SA Pseudogene 38) is a Pseudogene.

Additional gene information for RPSAP38 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP38 Gene

Genomics for RPSAP38 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP38 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J041947 Enhancer 0.2 Ensembl 0.7 +4.7 4692 0.2 HSALNG0041434 FBXO4 C5orf51 HSALNG0041435 RPSAP38 GHR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP38 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP38 Gene

Latest Assembly
chr5:41,951,240-41,952,193
(GRCh38/hg38)
Size:
954 bases
Orientation:
Minus strand

Previous Assembly
chr5:41,951,342-41,952,188
(GRCh37/hg19 by Entrez Gene)
Size:
847 bases
Orientation:
Minus strand

chr5:41,951,415-41,952,295
(GRCh37/hg19 by Ensembl)
Size:
881 bases
Orientation:
Minus strand

Genomic View for RPSAP38 Gene

Genes around RPSAP38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP38 Gene

Proteins for RPSAP38 Gene

Post-translational modifications for RPSAP38 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP38 Gene

Domains & Families for RPSAP38 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP38 Gene

Function for RPSAP38 Gene

Phenotypes From GWAS Catalog for RPSAP38 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP38 Gene

Localization for RPSAP38 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP38 Gene

Pathways & Interactions for RPSAP38 Gene

PathCards logo

SuperPathways for RPSAP38 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP38 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP38 Gene

Drugs & Compounds for RPSAP38 Gene

No Compound Related Data Available

Transcripts for RPSAP38 Gene

mRNA/cDNA for RPSAP38 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP38 Gene

No ASD Table

Relevant External Links for RPSAP38 Gene

GeneLoc Exon Structure for
RPSAP38

Expression for RPSAP38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP38 Gene

genes like me logo Genes that share expression patterns with RPSAP38: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP38 Gene

Orthologs for RPSAP38 Gene

Evolution for RPSAP38 Gene

ENSEMBL:
Gene Tree for RPSAP38 (if available)
TreeFam:
Gene Tree for RPSAP38 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPSAP38

No data available for Orthologs for RPSAP38 Gene

Paralogs for RPSAP38 Gene

No data available for Paralogs for RPSAP38 Gene

Variants for RPSAP38 Gene

Additional Variant Information for RPSAP38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP38
Leiden Open Variation Database (LOVD)
RPSAP38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP38 Gene

Disorders for RPSAP38 Gene

No disorders were found for RPSAP38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP38 Gene

Publications for RPSAP38 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. (PMID: 18204098) Hom G … Behrens TW (The New England journal of medicine 2008) 40
  3. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 40

No data available for Mastermind for RPSAP38 Gene

Products for RPSAP38 Gene

Sources for RPSAP38 Gene