Aliases for RPSAP19 Gene

Aliases for RPSAP19 Gene

  • Ribosomal Protein SA Pseudogene 19 2 3 5
  • RPSA_2_81 3
  • RPSAP19 5

External Ids for RPSAP19 Gene

Previous GeneCards Identifiers for RPSAP19 Gene

  • GC01M102006
  • GC01M102252

Summaries for RPSAP19 Gene

GeneCards Summary for RPSAP19 Gene

RPSAP19 (Ribosomal Protein SA Pseudogene 19) is a Pseudogene.

Additional gene information for RPSAP19 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP19 Gene

Genomics for RPSAP19 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J101845 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 0.2 -60.6 -60570 4.4 POLR2A CTCF OLFM3 RF00026-060 RNU6-352P RPSAP19 S1PR1
GH01J101842 Enhancer 0.4 Ensembl 0.2 -56.2 -56203 1.8 EGR1 RAD21 NANOG OLFM3 RF00026-060 RNU6-352P RPSAP19 S1PR1
GH01J101798 Enhancer 0.2 Ensembl 0.4 -11.3 -11303 0.4 RPSAP19 RF00026-060 RNU6-352P LINC01709 OLFM3 S1PR1
GH01J101852 Enhancer 0.2 ENCODE 0.2 -65.7 -65694 1.6 RF00026-060 RNU6-352P RPSAP19 OLFM3 S1PR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP19 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP19 Gene

Latest Assembly
chr1:101,786,266-101,787,298
(GRCh38/hg38)
Size:
1,033 bases
Orientation:
Minus strand

Previous Assembly
chr1:102,251,822-102,252,854
(GRCh37/hg19 by Entrez Gene)
Size:
1,033 bases
Orientation:
Minus strand

chr1:102,251,892-102,254,059
(GRCh37/hg19 by Ensembl)
Size:
2,168 bases
Orientation:
Minus strand

Genomic View for RPSAP19 Gene

Genes around RPSAP19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP19 Gene

Proteins for RPSAP19 Gene

Post-translational modifications for RPSAP19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP19 Gene

Domains & Families for RPSAP19 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP19 Gene

Function for RPSAP19 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP19 Gene

Localization for RPSAP19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP19 Gene

Pathways & Interactions for RPSAP19 Gene

PathCards logo

SuperPathways for RPSAP19 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP19 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP19 Gene

Drugs & Compounds for RPSAP19 Gene

No Compound Related Data Available

Transcripts for RPSAP19 Gene

mRNA/cDNA for RPSAP19 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP19 Gene

No ASD Table

Relevant External Links for RPSAP19 Gene

GeneLoc Exon Structure for
RPSAP19

Expression for RPSAP19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP19 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for RPSAP19

SOURCE GeneReport for Unigene cluster for RPSAP19 Gene:

Hs.567943
genes like me logo Genes that share expression patterns with RPSAP19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP19 Gene

Orthologs for RPSAP19 Gene

Evolution for RPSAP19 Gene

ENSEMBL:
Gene Tree for RPSAP19 (if available)
TreeFam:
Gene Tree for RPSAP19 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPSAP19

No data available for Orthologs for RPSAP19 Gene

Paralogs for RPSAP19 Gene

No data available for Paralogs for RPSAP19 Gene

Variants for RPSAP19 Gene

Additional Variant Information for RPSAP19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP19
Leiden Open Variation Database (LOVD)
RPSAP19

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP19 Gene

Disorders for RPSAP19 Gene

Additional Disease Information for RPSAP19

No disorders were found for RPSAP19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP19 Gene

Publications for RPSAP19 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3

Products for RPSAP19 Gene

Sources for RPSAP19 Gene