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Aliases for RPSAP16 Gene
External Ids for RPSAP16 Gene
- HGNC: 35478
- NCBI Entrez Gene: 100270872
- Ensembl: ENSG00000235145
Previous GeneCards Identifiers for RPSAP16 Gene
- GC01U902290
- GC01P179938
Summaries for RPSAP16 Gene
GeneCards Summary for RPSAP16 Gene
RPSAP16 (Ribosomal Protein SA Pseudogene 16) is a Pseudogene.
Additional gene information for RPSAP16 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP16 Gene
Genomics for RPSAP16 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RPSAP16 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J179968 | Promoter/Enhancer | 1.5 | EPDnew Ensembl ENCODE | 0.7 | +4.4 | 4406 | 9.6 | FEZF1 IKZF1 HES1 MBD2 ZEB1 NONO ARNT ZNF395 NFATC3 ZNF639 | CEP350 LHX4 ENSG00000261831 QSOX1 RPSAP16 HSALNG0008789 lnc-TOR1AIP2-6 | |
| GH01J179963 | Enhancer | 0.4 | Ensembl | 0.7 | -4.1 | -4094 | 2.2 | ZNF547 ZSCAN21 ZNF184 ZNF580 | ENSG00000261831 RPSAP16 HSALNG0008789 CEP350 QSOX1 | |
| GH01J179980 | Enhancer | 0.4 | Ensembl | 0.4 | +12.0 | 12006 | 1.2 | KDM4B NCOA3 ZNF280D ZNF512 | ENSG00000261831 RPSAP16 lnc-TOR1AIP2-6 CEP350 HSALNG0008789 QSOX1 | |
| GH01J179978 | Enhancer | 0.3 | Ensembl | 0.4 | +10.1 | 10106 | 0.2 | FOXA2 ATF2 | RPSAP16 CEP350 HSALNG0008789 lnc-TOR1AIP2-6 QSOX1 | |
| GH01J179962 | Enhancer | 0.3 | Ensembl | 0.4 | -5.7 | -5694 | 0.2 | FEZF1 | HSALNG0008789 CEP350 RPSAP16 QSOX1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RPSAP16 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for RPSAP16 Gene
Latest Assembly
- chr1:179,968,595-179,969,581
- (GRCh38/hg38)
- Size:
- 987 bases
- Orientation:
- Plus strand
Previous Assembly
- chr1:179,937,730-179,938,716
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 987 bases
- Orientation:
- Plus strand
- chr1:179,937,821-179,938,641
- (GRCh37/hg19 by Ensembl)
- Size:
- 821 bases
- Orientation:
- Plus strand
Genomic View for RPSAP16 Gene
Genes around RPSAP16 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1q25.2 by HGNC
- 1q25.2 by Entrez Gene
- 1q25.2 by Ensembl
RPSAP16 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RPSAP16 Gene
Proteins for RPSAP16 Gene
Post-translational modifications for RPSAP16 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPSAP16
- Origene Custom Protein Services for RPSAP16
Assay products for research
No data available for DME Specific Peptides for RPSAP16 Gene
Domains & Families for RPSAP16 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP16 Gene
Function for RPSAP16 Gene
Phenotypes From GWAS Catalog for RPSAP16 Gene
Animal Models for research
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RPSAP16 - Starting at $85 >
- * RPSAP16 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RPSAP16
miRNA products for research
Inhibitory RNAs for research
Clone products for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP16 Gene
Localization for RPSAP16 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP16 Gene
Transcripts for RPSAP16 Gene
mRNA/cDNA for RPSAP16 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000447583 821 nts (view in UCSC)
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for RPSAP16 - Starting at $85 >
- * RPSAP16 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
- Browse CRISPR knockouts for RPSAP16
miRNA products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for RPSAP16 Gene
- GeneLoc Exon Structure for
- RPSAP16
Expression for RPSAP16 Gene
Primer products for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP16 Gene
Orthologs for RPSAP16 Gene
No data available for Orthologs for RPSAP16 Gene
Paralogs for RPSAP16 Gene
No data available for Paralogs for RPSAP16 Gene
Variants for RPSAP16 Gene
Additional Variant Information for RPSAP16 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RPSAP16
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP16 Gene
Disorders for RPSAP16 Gene
No disorders were found for RPSAP16 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP16 Gene
Publications for RPSAP16 Gene
- Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
No data available for Mastermind for RPSAP16 Gene
Products for RPSAP16 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPSAP16
- Origene Custom Protein Services for RPSAP16
- Browse OriGene Inhibitory RNA Products For RPSAP16
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RPSAP16
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RPSAP16
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RPSAP16
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RPSAP16
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RPSAP16
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RPSAP16
Sources for RPSAP16 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB