RPSAP16 Gene (Pseudogene)

Ribosomal Protein SA Pseudogene 16

GC01P179938
GIFtS:
6
See more...

Aliases for RPSAP16 Gene

Aliases for RPSAP16 Gene

  • Ribosomal Protein SA Pseudogene 16 2 3 5
  • RPSA_1_135 3
  • RPSAP16 5

External Ids for RPSAP16 Gene

Previous GeneCards Identifiers for RPSAP16 Gene

  • GC01U902290

Summaries for RPSAP16 Gene

GeneCards Summary for RPSAP16 Gene

RPSAP16 (Ribosomal Protein SA Pseudogene 16) is a Pseudogene.

Additional gene information for RPSAP16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP16 Gene

Genomics for RPSAP16 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPSAP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J179951 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -13.8 -13799 6 BRCA1 RNF2 ARHGAP35 SP1 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 CEP350 ENSG00000260360 LOC101928933 piR-51619 LHX4 LHX4-AS1 QSOX1 ENSG00000261831 RPSAP16
GH01J179968 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.4 +6.1 6106 13.4 RNF2 ARHGAP35 CREB1 ATF7 PRDM10 ZNF629 ZNF512 LEF1 IKZF1 ZNF692 CEP350 LHX4 LHX4-AS1 ENSG00000261831 QSOX1 RPSAP16 lnc-TOR1AIP2-6
GH01J179962 Enhancer 0.5 Ensembl 0.7 -4.4 -4394 2.8 ZNF184 ZNF580 FEZF1 ZNF547 ZSCAN21 ENSG00000261831 RPSAP16 CEP350 QSOX1
GH01J179999 Enhancer 0.4 Ensembl 0.3 +31.6 31605 2 YY1 SPI1 MEIS2 RPS24P5 lnc-TOR1AIP2-6 ENSG00000261831 QSOX1 RPSAP16 CEP350
GH01J179965 Enhancer 0.2 Ensembl 0.7 -2.7 -2694 0.2 ENSG00000261831 RPSAP16 CEP350 QSOX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP16 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP16 Gene

Genomic Locations for RPSAP16 Gene
chr1:179,968,595-179,969,581
(GRCh38/hg38)
Size:
987 bases
Orientation:
Plus strand
chr1:179,937,730-179,938,716
(GRCh37/hg19)
Size:
987 bases
Orientation:
Plus strand

Genomic View for RPSAP16 Gene

Genes around RPSAP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP16 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPSAP16 Gene

Proteins for RPSAP16 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPSAP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP16 Gene

Domains & Families for RPSAP16 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP16 Gene

Function for RPSAP16 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP16 Gene

Localization for RPSAP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP16 Gene

Pathways & Interactions for RPSAP16 Gene

PathCards logo

SuperPathways for RPSAP16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP16 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP16 Gene

Drugs & Compounds for RPSAP16 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPSAP16 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPSAP16 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP16 Gene

No ASD Table

Relevant External Links for RPSAP16 Gene

GeneLoc Exon Structure for
RPSAP16

Expression for RPSAP16 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP16 Gene

mRNA expression in normal human tissues for RPSAP16 Gene
mRNA expression by GTEx for RPSAP16 Gene
genes like me logo Genes that share expression patterns with RPSAP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP16 Gene

Orthologs for RPSAP16 Gene

Evolution for RPSAP16 Gene

ENSEMBL:
Gene Tree for RPSAP16 (if available)
TreeFam:
Gene Tree for RPSAP16 (if available)

No data available for Orthologs for RPSAP16 Gene

Paralogs for RPSAP16 Gene

No data available for Paralogs for RPSAP16 Gene

Variants for RPSAP16 Gene

Additional Variant Information for RPSAP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP16 Gene

Disorders for RPSAP16 Gene

No disorders were found for RPSAP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP16 Gene

Publications for RPSAP16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP16 Gene

Products for RPSAP16 Gene

Sources for RPSAP16 Gene