Aliases for RPSAP16 Gene

Aliases for RPSAP16 Gene

  • Ribosomal Protein SA Pseudogene 16 2 3 5
  • RPSA_1_135 3
  • RPSAP16 5

External Ids for RPSAP16 Gene

Previous GeneCards Identifiers for RPSAP16 Gene

  • GC01U902290
  • GC01P179938

Summaries for RPSAP16 Gene

GeneCards Summary for RPSAP16 Gene

RPSAP16 (Ribosomal Protein SA Pseudogene 16) is a Pseudogene.

Additional gene information for RPSAP16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP16 Gene

Genomics for RPSAP16 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J179968 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.7 +4.4 4406 9.6 FEZF1 IKZF1 HES1 MBD2 ZEB1 NONO ARNT ZNF395 NFATC3 ZNF639 CEP350 LHX4 ENSG00000261831 QSOX1 RPSAP16 HSALNG0008789 lnc-TOR1AIP2-6
GH01J179963 Enhancer 0.4 Ensembl 0.7 -4.1 -4094 2.2 ZNF547 ZSCAN21 ZNF184 ZNF580 ENSG00000261831 RPSAP16 HSALNG0008789 CEP350 QSOX1
GH01J179980 Enhancer 0.4 Ensembl 0.4 +12.0 12006 1.2 KDM4B NCOA3 ZNF280D ZNF512 ENSG00000261831 RPSAP16 lnc-TOR1AIP2-6 CEP350 HSALNG0008789 QSOX1
GH01J179978 Enhancer 0.3 Ensembl 0.4 +10.1 10106 0.2 FOXA2 ATF2 RPSAP16 CEP350 HSALNG0008789 lnc-TOR1AIP2-6 QSOX1
GH01J179962 Enhancer 0.3 Ensembl 0.4 -5.7 -5694 0.2 FEZF1 HSALNG0008789 CEP350 RPSAP16 QSOX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP16 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP16 Gene

Latest Assembly
chr1:179,968,595-179,969,581
(GRCh38/hg38)
Size:
987 bases
Orientation:
Plus strand

Previous Assembly
chr1:179,937,730-179,938,716
(GRCh37/hg19 by Entrez Gene)
Size:
987 bases
Orientation:
Plus strand

chr1:179,937,821-179,938,641
(GRCh37/hg19 by Ensembl)
Size:
821 bases
Orientation:
Plus strand

Genomic View for RPSAP16 Gene

Genes around RPSAP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP16 Gene

Proteins for RPSAP16 Gene

Post-translational modifications for RPSAP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP16 Gene

Domains & Families for RPSAP16 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP16 Gene

Function for RPSAP16 Gene

Phenotypes From GWAS Catalog for RPSAP16 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP16 Gene

Localization for RPSAP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP16 Gene

Pathways & Interactions for RPSAP16 Gene

PathCards logo

SuperPathways for RPSAP16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP16 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP16 Gene

Drugs & Compounds for RPSAP16 Gene

No Compound Related Data Available

Transcripts for RPSAP16 Gene

mRNA/cDNA for RPSAP16 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP16 Gene

No ASD Table

Relevant External Links for RPSAP16 Gene

GeneLoc Exon Structure for
RPSAP16

Expression for RPSAP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP16 Gene

genes like me logo Genes that share expression patterns with RPSAP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP16 Gene

Orthologs for RPSAP16 Gene

Evolution for RPSAP16 Gene

ENSEMBL:
Gene Tree for RPSAP16 (if available)
TreeFam:
Gene Tree for RPSAP16 (if available)

No data available for Orthologs for RPSAP16 Gene

Paralogs for RPSAP16 Gene

No data available for Paralogs for RPSAP16 Gene

Variants for RPSAP16 Gene

Additional Variant Information for RPSAP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP16 Gene

Disorders for RPSAP16 Gene

No disorders were found for RPSAP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPSAP16 Gene

Publications for RPSAP16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPSAP16 Gene

Products for RPSAP16 Gene

Sources for RPSAP16 Gene