Aliases for RPSAP12 Gene

Aliases for RPSAP12 Gene

  • Ribosomal Protein SA Pseudogene 12 2 3 5
  • Laminin Receptor 1 Pseudogene 12 2 3
  • Laminin Receptor-Like 2 2 3
  • LAMRP2 2 3
  • RPSA_18_1254 3
  • LAMR1P12 3
  • RPSAP12 5
  • LAMRL2 3

External Ids for RPSAP12 Gene

Previous HGNC Symbols for RPSAP12 Gene

  • LAMRL2
  • LAMR1P12

Previous GeneCards Identifiers for RPSAP12 Gene

  • GC12U900549
  • GC12M067234
  • GC12M068947

Summaries for RPSAP12 Gene

GeneCards Summary for RPSAP12 Gene

RPSAP12 (Ribosomal Protein SA Pseudogene 12) is a Pseudogene.

Additional gene information for RPSAP12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPSAP12 Gene

Genomics for RPSAP12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPSAP12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J068553 Enhancer 0.2 Ensembl 600.7 +0.7 657 0.2 RPSAP12 piR-52423-002 piR-52966-008 piR-59262-002 piR-61223-006 piR-50399-006 RAP1B MDM1 lnc-NUP107-26
GH12J068556 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -5.2 -5216 4.9 IKZF1 PHF21A ZSCAN4 HDAC1 MCM7 ZNF766 JUND CTBP1 MCM3 JUN NUP107 RPL10P12 RAP1B KRT8P39 LINC02384 SNORA70G MDM1 DYRK2 CPSF6 CPM
GH12J068561 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -10.4 -10374 4.9 PRDM10 ZNF629 ZNF512 KDM1A ZNF692 JUND PRDM1 ZNF501 ZNF600 ATF7 LINC02384 RPL10P12 SNORA70G MDM1 NUP107 MDM2 piR-55829-002 RPSAP12 RAP1B lnc-NUP107-26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPSAP12 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPSAP12 Gene

Genomic Locations for RPSAP12 Gene
chr12:68,552,925-68,553,958
(GRCh38/hg38)
Size:
1,034 bases
Orientation:
Minus strand
chr12:68,946,705-68,947,738
(GRCh37/hg19)
Size:
1,034 bases
Orientation:
Minus strand

Genomic View for RPSAP12 Gene

Genes around RPSAP12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPSAP12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPSAP12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPSAP12 Gene

Proteins for RPSAP12 Gene

Post-translational modifications for RPSAP12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPSAP12 Gene

Domains & Families for RPSAP12 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPSAP12 Gene

Function for RPSAP12 Gene

Phenotypes From GWAS Catalog for RPSAP12 Gene

Phenotypes for RPSAP12 Gene

genes like me logo Genes that share phenotypes with RPSAP12: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPSAP12 Gene

Localization for RPSAP12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPSAP12 Gene

Pathways & Interactions for RPSAP12 Gene

PathCards logo

SuperPathways for RPSAP12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPSAP12 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPSAP12 Gene

Drugs & Compounds for RPSAP12 Gene

No Compound Related Data Available

Transcripts for RPSAP12 Gene

mRNA/cDNA for RPSAP12 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPSAP12 Gene

No ASD Table

Relevant External Links for RPSAP12 Gene

GeneLoc Exon Structure for
RPSAP12

Expression for RPSAP12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPSAP12 Gene

genes like me logo Genes that share expression patterns with RPSAP12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPSAP12 Gene

Orthologs for RPSAP12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPSAP12 Gene

Organism Taxonomy Gene Similarity Type Details
Corn
(Zea mays)
Liliopsida Zm.16537 30
Sea Vase
(Ciona intestinalis)
Ascidiacea Cin.14636 30
Species where no ortholog for RPSAP12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for RPSAP12 Gene

ENSEMBL:
Gene Tree for RPSAP12 (if available)
TreeFam:
Gene Tree for RPSAP12 (if available)

Paralogs for RPSAP12 Gene

No data available for Paralogs for RPSAP12 Gene

Variants for RPSAP12 Gene

Additional Variant Information for RPSAP12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPSAP12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPSAP12 Gene

Disorders for RPSAP12 Gene

Additional Disease Information for RPSAP12

Genetic Association Database
(GAD)

No disorders were found for RPSAP12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPSAP12 Gene

Publications for RPSAP12 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genomic analysis of the 67-kDa laminin receptor in normal and pathological tissues: circumstantial evidence for retroposon features. (PMID: 1649122) Bignon C … Martin PM (Genomics 1991) 2 3
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi DJ … Shiio Y (Journal of proteome research 2014) 3
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3
  5. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y … Kamatani N (Nature genetics 2010) 41

Products for RPSAP12 Gene

Sources for RPSAP12 Gene