Aliases for RPS6P20 Gene

Aliases for RPS6P20 Gene

  • Ribosomal Protein S6 Pseudogene 20 2 3 5
  • RPS6_10_1296 3

External Ids for RPS6P20 Gene

Previous GeneCards Identifiers for RPS6P20 Gene

  • GC12U901071
  • GC12M131777

Summaries for RPS6P20 Gene

GeneCards Summary for RPS6P20 Gene

RPS6P20 (Ribosomal Protein S6 Pseudogene 20) is a Pseudogene.

Additional gene information for RPS6P20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS6P20 Gene

Genomics for RPS6P20 Gene

GeneHancer (GH) Regulatory Elements for RPS6P20 Gene

Promoters and enhancers for RPS6P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J131292 Enhancer 0.4 Ensembl 518.9 -0.3 -325 1 RFX1 TOE1 MITF RPS6P20 lnc-STX2-13 ENSG00000249926 LOC100128002
GH12J131228 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 8.7 +63.0 62998 2.8 NRF1 USF1 BCLAF1 TEAD4 ZIC2 ZNF263 ZBTB11 AFF1 REST TOE1 piR-47162-040 RPS6P20 ENSG00000256250 LINC02370 HSALNG0095177 ENSG00000280217 LINC01257
GH12J131233 Enhancer 1 Ensembl ENCODE dbSUPER 4.8 +58.3 58322 2.7 EP300 RFX1 NFIC SMC3 ZNF592 NEUROD1 ZFHX2 FOXA1 PKNOX1 PRDM1 ENSG00000280217 HSALNG0095177 LINC01257 ENSG00000256250 RPS6P20 piR-47162-040
GH12J131246 Enhancer 0.5 dbSUPER 7.8 +46.1 46116 1.9 EP300 ZNF592 FOXM1 SMARCA4 E4F1 L3MBTL2 PKNOX1 MYBL2 ZSCAN4 MGA RPS6P20 LINC01257 HSALNG0095179 LOC105370082
GH12J131311 Enhancer 0.6 Ensembl 7.1 -18.9 -18925 1.4 ZIC2 REST MIER1 SIN3A WT1 ELF1 EHMT2 MAZ KLF17 NFIB ENSG00000286462 RPS6P20 EP400P1 piR-49549-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS6P20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS6P20 Gene

Genomic Locations for RPS6P20 Gene
chr12:131,292,068-131,293,176
(GRCh38/hg38)
Size:
1,109 bases
Orientation:
Minus strand
chr12:131,776,613-131,777,721
(GRCh37/hg19)
Size:
1,109 bases
Orientation:
Minus strand

Genomic View for RPS6P20 Gene

Genes around RPS6P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6P20 Gene

Proteins for RPS6P20 Gene

Post-translational modifications for RPS6P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6P20 Gene

Domains & Families for RPS6P20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS6P20 Gene

Function for RPS6P20 Gene

Phenotypes From GWAS Catalog for RPS6P20 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6P20 Gene

Localization for RPS6P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS6P20 Gene

Pathways & Interactions for RPS6P20 Gene

PathCards logo

SuperPathways for RPS6P20 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPS6P20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS6P20 Gene

Drugs & Compounds for RPS6P20 Gene

No Compound Related Data Available

Transcripts for RPS6P20 Gene

mRNA/cDNA for RPS6P20 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6P20 Gene

No ASD Table

Relevant External Links for RPS6P20 Gene

GeneLoc Exon Structure for
RPS6P20

Expression for RPS6P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS6P20 Gene

mRNA differential expression in normal tissues according to GTEx for RPS6P20 Gene

This gene is overexpressed in Testis (x52.2).
genes like me logo Genes that share expression patterns with RPS6P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS6P20 Gene

Orthologs for RPS6P20 Gene

Evolution for RPS6P20 Gene

ENSEMBL:
Gene Tree for RPS6P20 (if available)
TreeFam:
Gene Tree for RPS6P20 (if available)

No data available for Orthologs for RPS6P20 Gene

Paralogs for RPS6P20 Gene

No data available for Paralogs for RPS6P20 Gene

Variants for RPS6P20 Gene

Additional Variant Information for RPS6P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6P20 Gene

Disorders for RPS6P20 Gene

Additional Disease Information for RPS6P20

Genetic Association Database
(GAD)

No disorders were found for RPS6P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS6P20 Gene

Publications for RPS6P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54
  2. Joint influence of small-effect genetic variants on human longevity. (PMID: 20834067) Yashin AI … Ukraintseva SV (Aging 2010) 41 54
  3. Genomic variation associated with mortality among adults of European and African ancestry with heart failure: the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 20400778) Morrison AC … Smith NL (Circulation. Cardiovascular genetics 2010) 41 54
  4. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D … Ferrucci L (PLoS genetics 2008) 41 54

No data available for Mastermind for RPS6P20 Gene

Products for RPS6P20 Gene

Sources for RPS6P20 Gene