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Aliases for RPS6KA2-IT1 Gene

Subcategory (RNA class) for RPS6KA2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for RPS6KA2-IT1 Gene

  • RPS6KA2 Intronic Transcript 1 2 3 5
  • RPS6KA2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for RPS6KA2-IT1 Gene

Previous GeneCards Identifiers for RPS6KA2-IT1 Gene

  • GC00U933575
  • GC06M166875

Summaries for RPS6KA2-IT1 Gene

GeneCards Summary for RPS6KA2-IT1 Gene

RPS6KA2-IT1 (RPS6KA2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for RPS6KA2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS6KA2-IT1 Gene

Genomics for RPS6KA2-IT1 Gene

GeneHancer (GH) Regulatory Elements for RPS6KA2-IT1 Gene

Promoters and enhancers for RPS6KA2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I166465 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 -1.0 -991 2 CTCF ATF1 ZNF366 POLR2A NFATC1 ZSCAN5C FOS ATF7 CREM ZNF263 RPS6KA2-IT1 MIR1913 RPS6KA2
GH06I166463 Enhancer 0.5 Ensembl ENCODE 550.8 +1.8 1831 0.9 POLR2A RPS6KA2-IT1 PIR46600 RPS6KA2
GH06I166487 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -22.8 -22835 2 KLF1 ATF1 ZBTB40 RAD21 POLR2A ATF7 ETV6 ZNF687 ELF1 REST RNASET2 SFT2D1 MIR1913 RPS6KA2-IT1 RPS6KA2
GH06I166499 Enhancer 0.8 FANTOM5 dbSUPER 0.3 -34.1 -34101 0.2 ZFHX2 ZSCAN5C ZFP36 ZNF143 KLF5 IKZF2 EGR2 SFT2D1 PRR18 MIR1913 RPS6KA2-IT1 RPS6KA2
GH06I166507 Enhancer 0.7 dbSUPER 0.3 -42.2 -42180 1 ZSCAN4 ZNF140 YBX1 CDC5L TCF12 ZFHX2 NFATC1 ZNF239 EGR2 SRF MIR1913 FGFR1OP RPS6KA2-IT1 RPS6KA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS6KA2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS6KA2-IT1 Gene

Genomic Locations for RPS6KA2-IT1 Gene
chr6:166,460,663-166,465,383
(GRCh38/hg38)
Size:
4,721 bases
Orientation:
Minus strand
chr6:166,874,151-166,878,871
(GRCh37/hg19)

Genomic View for RPS6KA2-IT1 Gene

Genes around RPS6KA2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS6KA2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS6KA2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS6KA2-IT1 Gene

Proteins for RPS6KA2-IT1 Gene

Post-translational modifications for RPS6KA2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS6KA2-IT1 Gene

Domains & Families for RPS6KA2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS6KA2-IT1 Gene

Function for RPS6KA2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS6KA2-IT1 Gene

Localization for RPS6KA2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS6KA2-IT1 Gene

Pathways & Interactions for RPS6KA2-IT1 Gene

SuperPathways for RPS6KA2-IT1 Gene

No Data Available

Interacting Proteins for RPS6KA2-IT1 Gene

Gene Ontology (GO) - Biological Process for RPS6KA2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS6KA2-IT1 Gene

Drugs & Compounds for RPS6KA2-IT1 Gene

No Compound Related Data Available

Transcripts for RPS6KA2-IT1 Gene

mRNA/cDNA for RPS6KA2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPS6KA2-IT1 Gene

RPS6KA2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS6KA2-IT1 Gene

No ASD Table

Relevant External Links for RPS6KA2-IT1 Gene

GeneLoc Exon Structure for
RPS6KA2-IT1
ECgene alternative splicing isoforms for
RPS6KA2-IT1

Expression for RPS6KA2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS6KA2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for RPS6KA2-IT1 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.2).

SOURCE GeneReport for Unigene cluster for RPS6KA2-IT1 Gene:

Hs.675698
genes like me logo Genes that share expression patterns with RPS6KA2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS6KA2-IT1 Gene

Orthologs for RPS6KA2-IT1 Gene

Evolution for RPS6KA2-IT1 Gene

ENSEMBL:
Gene Tree for RPS6KA2-IT1 (if available)
TreeFam:
Gene Tree for RPS6KA2-IT1 (if available)

No data available for Orthologs for RPS6KA2-IT1 Gene

Paralogs for RPS6KA2-IT1 Gene

No data available for Paralogs for RPS6KA2-IT1 Gene

Variants for RPS6KA2-IT1 Gene

Sequence variations from dbSNP and Humsavar for RPS6KA2-IT1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1001018189 -- 166,460,804(-) G/C non_coding_transcript_variant
rs1002208684 -- 166,463,648(-) A/G intron_variant
rs1002371280 -- 166,466,333(-) G/A/C upstream_transcript_variant
rs1002467912 -- 166,461,349(-) G/A intron_variant
rs1002666940 -- 166,461,594(-) A/G intron_variant

Additional Variant Information for RPS6KA2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS6KA2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS6KA2-IT1 Gene

Disorders for RPS6KA2-IT1 Gene

Additional Disease Information for RPS6KA2-IT1

No disorders were found for RPS6KA2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS6KA2-IT1 Gene

Publications for RPS6KA2-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for RPS6KA2-IT1 Gene

Sources for RPS6KA2-IT1 Gene

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