Aliases for RPS5P4 Gene

Aliases for RPS5P4 Gene

  • RPS5 Pseudogene 4 2 3
  • Ribosomal Protein S5 Pseudogene 4 2 3
  • Ribosomal Protein S5 (RPS5) Pseudogene 5
  • RPS5_1_162 3
  • AC104333.3 5

External Ids for RPS5P4 Gene

Previous GeneCards Identifiers for RPS5P4 Gene

  • GC01P211064
  • GC01P212995

Summaries for RPS5P4 Gene

GeneCards Summary for RPS5P4 Gene

RPS5P4 (RPS5 Pseudogene 4) is a Pseudogene.

Additional gene information for RPS5P4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS5P4 Gene

Genomics for RPS5P4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS5P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212816 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -5.1 -5142 5.6 GATAD2A ATF7 RCOR2 RELA RXRB IRF2 RCOR1 PKNOX1 CEBPA FOXK2 FLVCR1-DT ENSG00000235182 FLVCR1 RPS28P2 TATDN3 VASH2 BATF3 SPATA45 RPS5P4 piR-38579-004
GH01J212813 Enhancer 0.4 Ensembl 0.4 -9.4 -9356 2.8 CTCF REST RAD21 SMC3 FLVCR1-DT TATDN3 VASH2 SPATA45 BATF3 RPS5P4 piR-38579-004 NSL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS5P4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS5P4 Gene

Genomic Locations for RPS5P4 Gene
chr1:212,823,957-212,824,507
(GRCh38/hg38)
Size:
551 bases
Orientation:
Plus strand
chr1:212,995,656-212,997,939
(GRCh37/hg19)
Size:
2,284 bases
Orientation:
Plus strand

Genomic View for RPS5P4 Gene

Genes around RPS5P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS5P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS5P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS5P4 Gene

Proteins for RPS5P4 Gene

Post-translational modifications for RPS5P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS5P4 Gene

Domains & Families for RPS5P4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS5P4 Gene

Function for RPS5P4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS5P4 Gene

Localization for RPS5P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS5P4 Gene

Pathways & Interactions for RPS5P4 Gene

PathCards logo

SuperPathways for RPS5P4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS5P4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS5P4 Gene

Drugs & Compounds for RPS5P4 Gene

No Compound Related Data Available

Transcripts for RPS5P4 Gene

mRNA/cDNA for RPS5P4 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS5P4 Gene

No ASD Table

Relevant External Links for RPS5P4 Gene

GeneLoc Exon Structure for
RPS5P4

Expression for RPS5P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS5P4 Gene

genes like me logo Genes that share expression patterns with RPS5P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS5P4 Gene

Orthologs for RPS5P4 Gene

Evolution for RPS5P4 Gene

ENSEMBL:
Gene Tree for RPS5P4 (if available)
TreeFam:
Gene Tree for RPS5P4 (if available)

No data available for Orthologs for RPS5P4 Gene

Paralogs for RPS5P4 Gene

No data available for Paralogs for RPS5P4 Gene

Variants for RPS5P4 Gene

Additional Variant Information for RPS5P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS5P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS5P4 Gene

Disorders for RPS5P4 Gene

No disorders were found for RPS5P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS5P4 Gene

Publications for RPS5P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS5P4 Gene

Products for RPS5P4 Gene

Sources for RPS5P4 Gene