Aliases for RPS4XP21 Gene

Aliases for RPS4XP21 Gene

  • Ribosomal Protein S4X Pseudogene 21 2 3 5
  • RPS4X_10_1649 3
  • RPS4P21 3

External Ids for RPS4XP21 Gene

Previous HGNC Symbols for RPS4XP21 Gene

  • RPS4P21

Previous GeneCards Identifiers for RPS4XP21 Gene

  • GC19M034514
  • GC19M034516
  • GC19M034583

Summaries for RPS4XP21 Gene

GeneCards Summary for RPS4XP21 Gene

RPS4XP21 (Ribosomal Protein S4X Pseudogene 21) is a Pseudogene.

Additional gene information for RPS4XP21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS4XP21 Gene

Genomics for RPS4XP21 Gene

GeneHancer (GH) Regulatory Elements for RPS4XP21 Gene

Promoters and enhancers for RPS4XP21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J034096 Enhancer 0.8 ENCODE 0.7 -3.1 -3105 0.2 CTCF ZNF10 REST RAD21 SMC3 ZSCAN18 ZNF76 KLF13 KLF8 REPIN1 ZNF599 ZNF181 ZNF302 RPS4XP21 lnc-SCGB2B2-134 lnc-SCGB2B2-4
GH19J034084 Enhancer 0.7 Ensembl ENCODE 0.4 +8.3 8266 1.8 ZIC2 CTBP1 ZNF263 ESR1 GATA3 FOXA1 ZNF335 DPF2 ZNF217 ZNF579 piR-52438-050 RPS4XP21 lnc-SCGB2B2-4
GH19J034082 Enhancer 0.6 Ensembl ENCODE 0.4 +10.5 10465 1.8 TEAD4 NR2F2 MAFK SMARCA4 EZH2 piR-52438-050 RPS4XP21 lnc-SCGB2B2-4
GH19J034088 Enhancer 0.5 Ensembl 0.4 +5.1 5065 0.2 ZNF426 FOXA1 ZNF34 ZNF518A ESR1 ZNF24 ZNF394 LSM14A RPS4XP21 piR-52438-050 lnc-SCGB2B2-4
GH19J034104 Enhancer 0.5 Ensembl 0.4 -11.0 -11035 0.8 EP300 SPI1 ZNF384 SIN3A CTCF MAFK POLR2A lnc-SCGB2B2-134 RPS4XP21 lnc-SCGB2B2-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS4XP21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS4XP21 Gene

Genomic Locations for RPS4XP21 Gene
chr19:34,092,476-34,093,366
(GRCh38/hg38)
Size:
891 bases
Orientation:
Minus strand
chr19:34,583,381-34,584,271
(GRCh37/hg19)
Size:
891 bases
Orientation:
Minus strand

Genomic View for RPS4XP21 Gene

Genes around RPS4XP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS4XP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS4XP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS4XP21 Gene

Proteins for RPS4XP21 Gene

Post-translational modifications for RPS4XP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS4XP21 Gene

Domains & Families for RPS4XP21 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS4XP21 Gene

Function for RPS4XP21 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS4XP21 Gene

Localization for RPS4XP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS4XP21 Gene

Pathways & Interactions for RPS4XP21 Gene

PathCards logo

SuperPathways for RPS4XP21 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for RPS4XP21 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS4XP21 Gene

Drugs & Compounds for RPS4XP21 Gene

No Compound Related Data Available

Transcripts for RPS4XP21 Gene

mRNA/cDNA for RPS4XP21 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS4XP21 Gene

No ASD Table

Relevant External Links for RPS4XP21 Gene

GeneLoc Exon Structure for
RPS4XP21

Expression for RPS4XP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS4XP21 Gene

mRNA differential expression in normal tissues according to GTEx for RPS4XP21 Gene

This gene is overexpressed in Testis (x38.5) and Pituitary (x14.5).

Protein differential expression in normal tissues from HIPED for RPS4XP21 Gene

This gene is overexpressed in Heart (65.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for RPS4XP21 Gene



Protein tissue co-expression partners for RPS4XP21 Gene

genes like me logo Genes that share expression patterns with RPS4XP21: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS4XP21 Gene

Orthologs for RPS4XP21 Gene

Evolution for RPS4XP21 Gene

ENSEMBL:
Gene Tree for RPS4XP21 (if available)
TreeFam:
Gene Tree for RPS4XP21 (if available)

No data available for Orthologs for RPS4XP21 Gene

Paralogs for RPS4XP21 Gene

No data available for Paralogs for RPS4XP21 Gene

Variants for RPS4XP21 Gene

Additional Variant Information for RPS4XP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS4XP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS4XP21 Gene

Disorders for RPS4XP21 Gene

No disorders were found for RPS4XP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS4XP21 Gene

Publications for RPS4XP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 54

Products for RPS4XP21 Gene

Sources for RPS4XP21 Gene