Aliases for RPS4XP12 Gene

Aliases for RPS4XP12 Gene

  • Ribosomal Protein S4X Pseudogene 12 2 3 5
  • Ribosomal Protein S4, X-Linked Pseudogene 3
  • RPS4X_4_1183 3
  • RPS4XP12 5
  • RPS4P12 3

External Ids for RPS4XP12 Gene

Previous HGNC Symbols for RPS4XP12 Gene

  • RPS4P12

Previous GeneCards Identifiers for RPS4XP12 Gene

  • GC11M121121

Summaries for RPS4XP12 Gene

GeneCards Summary for RPS4XP12 Gene

RPS4XP12 (Ribosomal Protein S4X Pseudogene 12) is a Pseudogene.

Additional gene information for RPS4XP12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS4XP12 Gene

Genomics for RPS4XP12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS4XP12 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J121248 Enhancer 0.9 Ensembl ENCODE dbSUPER 250.7 +0.8 777 3.2 ZNF654 JUND CTCF REST TRIM22 RAD21 SMC3 FOSL2 ZNF143 ATF2 RPS4XP12 lnc-BLID-11 SC5D LOC105369534 lnc-SC5D-4 TECTA
GH11J121257 Enhancer 0.9 Ensembl 0.4 -6.3 -6323 0.6 NCOR1 IKZF1 NFIC NONO HES1 ARNT NBN TAL1 ZNF316 ZNF843 TBCEL SC5D ENSG00000246790 SORL1 RPS4XP12 lnc-BLID-11 piR-61861-006 TECTA
GH11J121258 Enhancer 0.7 Ensembl 0.4 -7.4 -7359 0.9 JUND ZNF217 CTBP1 CUX1 GATA3 TCF7L2 SMARCE1 NCOA1 FOXA1 DPF2 SC5D ENSG00000246790 SORL1 piR-61861-006 RPS4XP12 lnc-BLID-11 TECTA
GH11J121246 Enhancer 0.4 Ensembl 0.7 +4.3 4277 0.6 ZFP64 GABPB1 ZNF680 LOC105369534 SC5D ARHGEF12 RPS4XP12 lnc-BLID-11 lnc-SC5D-4 TECTA
GH11J121255 Enhancer 0.3 Ensembl 0.7 -4.9 -4922 0.6 POU5F1 SC5D ENSG00000246790 SORL1 RPS4XP12 lnc-BLID-11 piR-61861-006 TECTA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS4XP12 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS4XP12 Gene

Latest Assembly
chr11:121,250,264-121,250,978
(GRCh38/hg38)
Size:
715 bases
Orientation:
Minus strand

Previous Assembly
chr11:121,120,973-121,121,682
(GRCh37/hg19 by Entrez Gene)
Size:
710 bases
Orientation:
Minus strand

chr11:121,120,979-121,121,687
(GRCh37/hg19 by Ensembl)
Size:
709 bases
Orientation:
Minus strand

Genomic View for RPS4XP12 Gene

Genes around RPS4XP12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS4XP12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS4XP12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS4XP12 Gene

Proteins for RPS4XP12 Gene

Post-translational modifications for RPS4XP12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS4XP12 Gene

Domains & Families for RPS4XP12 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS4XP12 Gene

Function for RPS4XP12 Gene

Phenotypes From GWAS Catalog for RPS4XP12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS4XP12 Gene

Localization for RPS4XP12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS4XP12 Gene

Pathways & Interactions for RPS4XP12 Gene

PathCards logo

SuperPathways for RPS4XP12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS4XP12 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS4XP12 Gene

Drugs & Compounds for RPS4XP12 Gene

No Compound Related Data Available

Transcripts for RPS4XP12 Gene

mRNA/cDNA for RPS4XP12 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS4XP12 Gene

No ASD Table

Relevant External Links for RPS4XP12 Gene

GeneLoc Exon Structure for
RPS4XP12

Expression for RPS4XP12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS4XP12 Gene

genes like me logo Genes that share expression patterns with RPS4XP12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS4XP12 Gene

Orthologs for RPS4XP12 Gene

Evolution for RPS4XP12 Gene

ENSEMBL:
Gene Tree for RPS4XP12 (if available)
TreeFam:
Gene Tree for RPS4XP12 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPS4XP12

No data available for Orthologs for RPS4XP12 Gene

Paralogs for RPS4XP12 Gene

No data available for Paralogs for RPS4XP12 Gene

Variants for RPS4XP12 Gene

Additional Variant Information for RPS4XP12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS4XP12
Leiden Open Variation Database (LOVD)
RPS4XP12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS4XP12 Gene

Disorders for RPS4XP12 Gene

No disorders were found for RPS4XP12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS4XP12 Gene

Publications for RPS4XP12 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS4XP12 Gene

Products for RPS4XP12 Gene

Sources for RPS4XP12 Gene