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Aliases for RPS3P6 Gene

Subcategory (RNA class) for RPS3P6 Gene

lncRNA

Aliases for RPS3P6 Gene

  • Ribosomal Protein S3 Pseudogene 6 2 3 5
  • RPS3_2_1244 3

External Ids for RPS3P6 Gene

ORGUL Members for RPS3P6 Gene

Previous GeneCards Identifiers for RPS3P6 Gene

  • GC12M060703
  • GC12M062416

Summaries for RPS3P6 Gene

GeneCards Summary for RPS3P6 Gene

RPS3P6 (Ribosomal Protein S3 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS3P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3P6 Gene

Genomics for RPS3P6 Gene

GeneHancer (GH) Regulatory Elements for RPS3P6 Gene

Promoters and enhancers for RPS3P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I062002 Enhancer 0.2 FANTOM5 0.4 +19.2 19243 0 FAM19A2 RPS3P6 GC12P061937
GH12I061994 Enhancer 0.2 FANTOM5 0.3 +27.5 27519 0.3 FAM19A2 RPS3P6 GC12P061937
GH12I061991 Enhancer 0.2 Ensembl 0.3 +30.2 30174 0.4 RPS3P6 GC12P061937 FAM19A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3P6 Gene

Genomic Locations for RPS3P6 Gene
chr12:62,021,488-62,022,175
(GRCh38/hg38)
Size:
688 bases
Orientation:
Minus strand
chr12:62,415,269-62,415,956
(GRCh37/hg19)

Genomic View for RPS3P6 Gene

Genes around RPS3P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3P6 Gene

Proteins for RPS3P6 Gene

Post-translational modifications for RPS3P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3P6 Gene

Domains & Families for RPS3P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3P6 Gene

Function for RPS3P6 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3P6 Gene

Localization for RPS3P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3P6 Gene

Pathways & Interactions for RPS3P6 Gene

SuperPathways for RPS3P6 Gene

No Data Available

Interacting Proteins for RPS3P6 Gene

Gene Ontology (GO) - Biological Process for RPS3P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3P6 Gene

Drugs & Compounds for RPS3P6 Gene

No Compound Related Data Available

Transcripts for RPS3P6 Gene

mRNA/cDNA for RPS3P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3P6 Gene

No ASD Table

Relevant External Links for RPS3P6 Gene

GeneLoc Exon Structure for
RPS3P6
ECgene alternative splicing isoforms for
RPS3P6

Expression for RPS3P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS3P6 Gene

This gene is overexpressed in Whole Blood (x7.8) and Testis (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of RPS3P6 Gene:

RPS3P6
genes like me logo Genes that share expression patterns with RPS3P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3P6 Gene

Orthologs for RPS3P6 Gene

Evolution for RPS3P6 Gene

ENSEMBL:
Gene Tree for RPS3P6 (if available)
TreeFam:
Gene Tree for RPS3P6 (if available)

No data available for Orthologs for RPS3P6 Gene

Paralogs for RPS3P6 Gene

No data available for Paralogs for RPS3P6 Gene

Variants for RPS3P6 Gene

Additional Variant Information for RPS3P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3P6 Gene

Disorders for RPS3P6 Gene

Additional Disease Information for RPS3P6

Genetic Association Database
(GAD)

No disorders were found for RPS3P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3P6 Gene

Publications for RPS3P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study of lung function decline in adults with and without asthma. (PMID: 22424883) Imboden M … Probst-Hensch NM (The Journal of allergy and clinical immunology 2012) 44 58
  3. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. (PMID: 17052657) Fung HC … Singleton A (The Lancet. Neurology 2006) 44 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for RPS3P6 Gene

Sources for RPS3P6 Gene

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