Aliases for RPS3AP50 Gene

Aliases for RPS3AP50 Gene

  • RPS3A Pseudogene 50 2 3 5
  • Ribosomal Protein S3a Pseudogene 50 2 3
  • RPS3A_24_1646 3
  • RPS3AP50 5

External Ids for RPS3AP50 Gene

Previous GeneCards Identifiers for RPS3AP50 Gene

  • GC19U901017
  • GC19P033832

Summaries for RPS3AP50 Gene

GeneCards Summary for RPS3AP50 Gene

RPS3AP50 (RPS3A Pseudogene 50) is a Pseudogene.

Additional gene information for RPS3AP50 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS3AP50 Gene

Genomics for RPS3AP50 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS3AP50 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J033340 Enhancer 0.6 Ensembl 600.7 +0.2 215 1 ZNF512 ZNF776 ZNF311 ZNF148 MCM5 ZIK1 SALL2 ZNF366 CEBPG ZNF521 RPS3AP50 GPATCH1 ZNF507 CEBPG CEP89 SLC7A10 LRP3 FAAP24 PDCD5 CHST8
GH19J033339 Enhancer 0.6 Ensembl 600.7 -1.0 -985 1 OSR2 ZNF195 ZSCAN5A HNF4A ZNF624 ZNF664 FOS KLF14 SP7 ZNF121 RPS3AP50 CEBPG SLC7A10 LRP3 CHST8 lnc-CEBPA-3 CEBPA
GH19J033350 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.1 10120 1.5 CREB1 GATAD2A ZNF629 ZNF692 SP1 ZNF600 RFX1 FOXA2 YY1 PKNOX1 CEBPG PDCD5 CHST8 CEBPA-DT AKR1B1P7 RPS3AP50 CEBPA
GH19J033343 Enhancer 0.7 Ensembl ENCODE 0.7 +3.7 3715 2.8 ZSCAN4 ZNF311 ZNF341 ZNF211 ZFHX2 CBLL2 ZNF146 EGR2 ZNF493 ZNF121 ZNF507 CEBPG CHST8 RPS3AP50 AKR1B1P7 CEBPA
GH19J033348 Enhancer 0.8 ENCODE 0.4 +8.2 8164 0.2 PRDM10 REST ZNF692 ZIC2 PATZ1 SP1 ZNF600 RBAK ZNF211 ZBTB20 GPATCH1 GARRE1 CEP89 LSM14A CEBPG DPY19L3 RPS3AP50 AKR1B1P7 CEBPA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS3AP50 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS3AP50 Gene

Genomic Locations for RPS3AP50 Gene
chr19:33,340,686-33,341,984
(GRCh38/hg38)
Size:
1,299 bases
Orientation:
Plus strand
chr19:33,831,592-33,832,890
(GRCh37/hg19)
Size:
1,299 bases
Orientation:
Plus strand

Genomic View for RPS3AP50 Gene

Genes around RPS3AP50 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP50 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP50 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP50 Gene

Proteins for RPS3AP50 Gene

Post-translational modifications for RPS3AP50 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP50 Gene

Domains & Families for RPS3AP50 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS3AP50 Gene

Function for RPS3AP50 Gene

Phenotypes From GWAS Catalog for RPS3AP50 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP50 Gene

Localization for RPS3AP50 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP50 Gene

Pathways & Interactions for RPS3AP50 Gene

PathCards logo

SuperPathways for RPS3AP50 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS3AP50 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS3AP50 Gene

Drugs & Compounds for RPS3AP50 Gene

No Compound Related Data Available

Transcripts for RPS3AP50 Gene

mRNA/cDNA for RPS3AP50 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP50 Gene

No ASD Table

Relevant External Links for RPS3AP50 Gene

GeneLoc Exon Structure for
RPS3AP50

Expression for RPS3AP50 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS3AP50 Gene

genes like me logo Genes that share expression patterns with RPS3AP50: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP50 Gene

Orthologs for RPS3AP50 Gene

Evolution for RPS3AP50 Gene

ENSEMBL:
Gene Tree for RPS3AP50 (if available)
TreeFam:
Gene Tree for RPS3AP50 (if available)

No data available for Orthologs for RPS3AP50 Gene

Paralogs for RPS3AP50 Gene

No data available for Paralogs for RPS3AP50 Gene

Variants for RPS3AP50 Gene

Additional Variant Information for RPS3AP50 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP50

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP50 Gene

Disorders for RPS3AP50 Gene

No disorders were found for RPS3AP50 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP50 Gene

Publications for RPS3AP50 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS3AP50 Gene

Products for RPS3AP50 Gene

Sources for RPS3AP50 Gene