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Aliases for RPS3AP46 Gene

Aliases for RPS3AP46 Gene

  • Ribosomal Protein S3a Pseudogene 46 2 3 5
  • RPS3A_19_1365 3

External Ids for RPS3AP46 Gene

Previous GeneCards Identifiers for RPS3AP46 Gene

  • GC14U900924
  • GC14P054080

Summaries for RPS3AP46 Gene

GeneCards Summary for RPS3AP46 Gene

RPS3AP46 (Ribosomal Protein S3a Pseudogene 46) is a Pseudogene.

Additional gene information for RPS3AP46 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP46 Gene

Genomics for RPS3AP46 Gene

GeneHancer (GH) Regulatory Elements for RPS3AP46 Gene

Promoters and enhancers for RPS3AP46 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I053612 Enhancer 1.2 Ensembl ENCODE 550.8 +1.4 1408 2.8 PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 IRF4 YY1 ZNF207 RPS3AP46 ENSG00000225680 GC14P053668 LOC105370504 ENSG00000237356
GH14I053608 Enhancer 0.8 FANTOM5 ENCODE 0.8 -4.1 -4116 0.9 KLF1 JUN USF2 KLF4 JUND CREB1 FOS FOSL2 RPS3AP46 ENSG00000225680 GC14M053511 LOC105370504 ENSG00000237356
GH14I053600 Enhancer 0.3 ENCODE 0.4 -13.3 -13291 0.6 HLF GC14M053511 RPS3AP46 LOC105370504 ENSG00000237356
GH14I053599 Enhancer 0.2 ENCODE 0.4 -12.9 -12906 0.2 ENSG00000225680 GC14M053511 RPS3AP46 LOC105370504 ENSG00000237356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3AP46 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3AP46 Gene

Genomic Locations for RPS3AP46 Gene
chr14:53,612,724-53,613,405
(GRCh38/hg38)
Size:
682 bases
Orientation:
Plus strand
chr14:54,079,442-54,080,123
(GRCh37/hg19)

Genomic View for RPS3AP46 Gene

Genes around RPS3AP46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP46 Gene

Proteins for RPS3AP46 Gene

Post-translational modifications for RPS3AP46 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP46 Gene

Domains & Families for RPS3AP46 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP46 Gene

Function for RPS3AP46 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP46 Gene

Localization for RPS3AP46 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP46 Gene

Pathways & Interactions for RPS3AP46 Gene

SuperPathways for RPS3AP46 Gene

No Data Available

Interacting Proteins for RPS3AP46 Gene

Gene Ontology (GO) - Biological Process for RPS3AP46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP46 Gene

Drugs & Compounds for RPS3AP46 Gene

No Compound Related Data Available

Transcripts for RPS3AP46 Gene

mRNA/cDNA for RPS3AP46 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP46 Gene

No ASD Table

Relevant External Links for RPS3AP46 Gene

GeneLoc Exon Structure for
RPS3AP46
ECgene alternative splicing isoforms for
RPS3AP46

Expression for RPS3AP46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP46 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP46 Gene:

RPS3AP46
genes like me logo Genes that share expression patterns with RPS3AP46: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP46 Gene

Orthologs for RPS3AP46 Gene

Evolution for RPS3AP46 Gene

ENSEMBL:
Gene Tree for RPS3AP46 (if available)
TreeFam:
Gene Tree for RPS3AP46 (if available)

No data available for Orthologs for RPS3AP46 Gene

Paralogs for RPS3AP46 Gene

No data available for Paralogs for RPS3AP46 Gene

Variants for RPS3AP46 Gene

Additional Variant Information for RPS3AP46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP46 Gene

Disorders for RPS3AP46 Gene

Additional Disease Information for RPS3AP46

Genetic Association Database
(GAD)

No disorders were found for RPS3AP46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP46 Gene

Publications for RPS3AP46 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) Simón-Sánchez J … Gasser T (Nature genetics 2009) 44 58
  3. Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer. (PMID: 19011631) COGENT Study … Dunlop MG (Nature genetics 2008) 44 58
  4. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 44 58
  5. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs JB … Dupuis J (BMC medical genetics 2007) 44 58

Products for RPS3AP46 Gene

Sources for RPS3AP46 Gene

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