Aliases for RPS3AP42 Gene

Aliases for RPS3AP42 Gene

  • RPS3A Pseudogene 42 2 3 5
  • Ribosomal Protein S3a Pseudogene 42 2 3
  • RPS3A_20_1165 3
  • RPS3AP42 5

External Ids for RPS3AP42 Gene

Previous GeneCards Identifiers for RPS3AP42 Gene

  • GC11U901295
  • GC11M092232

Summaries for RPS3AP42 Gene

GeneCards Summary for RPS3AP42 Gene

RPS3AP42 (RPS3A Pseudogene 42) is a Pseudogene.

Additional gene information for RPS3AP42 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS3AP42 Gene

Genomics for RPS3AP42 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS3AP42 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J092510 Enhancer 0.6 Ensembl ENCODE 0.4 -12.5 -12525 2.6 TEAD4 USF1 GATA3 NANOG SP1 EGR1 RPS3AP42 AB372693-001 FAT3 MTNR1B
GH11J092527 Enhancer 0.5 Ensembl ENCODE 0.3 -29.2 -29170 0.7 CTCF GATA3 AB372693-001 RPS3AP42 FAT3 MTNR1B
GH11J092505 Enhancer 0.3 Ensembl 0.4 -7.3 -7343 2.6 ZIC2 RPS3AP42 AB372693-001 FAT3 MTNR1B
GH11J092522 Enhancer 0.3 Ensembl 0.4 -23.9 -23943 1.8 ZSCAN5C AB372693-001 RPS3AP42 FAT3 MTNR1B
GH11J092524 Enhancer 0.2 Ensembl 0.3 -25.8 -25843 0.4 AB372693-001 RPS3AP42 FAT3 MTNR1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS3AP42 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS3AP42 Gene

Genomic Locations for RPS3AP42 Gene
chr11:92,498,101-92,498,958
(GRCh38/hg38)
Size:
858 bases
Orientation:
Minus strand
chr11:92,231,267-92,232,124
(GRCh37/hg19)
Size:
858 bases
Orientation:
Minus strand

Genomic View for RPS3AP42 Gene

Genes around RPS3AP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP42 Gene

Proteins for RPS3AP42 Gene

Post-translational modifications for RPS3AP42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP42 Gene

Domains & Families for RPS3AP42 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS3AP42 Gene

Function for RPS3AP42 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP42 Gene

Localization for RPS3AP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP42 Gene

Pathways & Interactions for RPS3AP42 Gene

PathCards logo

SuperPathways for RPS3AP42 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS3AP42 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS3AP42 Gene

Drugs & Compounds for RPS3AP42 Gene

No Compound Related Data Available

Transcripts for RPS3AP42 Gene

mRNA/cDNA for RPS3AP42 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP42 Gene

No ASD Table

Relevant External Links for RPS3AP42 Gene

GeneLoc Exon Structure for
RPS3AP42

Expression for RPS3AP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS3AP42 Gene

genes like me logo Genes that share expression patterns with RPS3AP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP42 Gene

Orthologs for RPS3AP42 Gene

Evolution for RPS3AP42 Gene

ENSEMBL:
Gene Tree for RPS3AP42 (if available)
TreeFam:
Gene Tree for RPS3AP42 (if available)

No data available for Orthologs for RPS3AP42 Gene

Paralogs for RPS3AP42 Gene

No data available for Paralogs for RPS3AP42 Gene

Variants for RPS3AP42 Gene

Additional Variant Information for RPS3AP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP42 Gene

Disorders for RPS3AP42 Gene

Additional Disease Information for RPS3AP42

Genetic Association Database
(GAD)

No disorders were found for RPS3AP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP42 Gene

Publications for RPS3AP42 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K … Salomaa V (Circulation. Cardiovascular genetics 2012) 41
  3. A genome-wide association study of gestational diabetes mellitus in Korean women. (PMID: 22233651) Kwak SH … Park KS (Diabetes 2012) 41
  4. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. (PMID: 21909109) Kim YJ … Cho YS (Nature genetics 2011) 41
  5. A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium. (PMID: 21386085) Kraja AT … Borecki IB (Diabetes 2011) 41

Products for RPS3AP42 Gene

Sources for RPS3AP42 Gene