Aliases for RPS3AP40 Gene

Aliases for RPS3AP40 Gene

  • RPS3A Pseudogene 40 2 3 5
  • Ribosomal Protein S3a Pseudogene 40 2 3
  • RPS3A_19_1151 3
  • RPS3AP40 5

External Ids for RPS3AP40 Gene

Previous GeneCards Identifiers for RPS3AP40 Gene

  • GC11M067450
  • GC11M067694

Summaries for RPS3AP40 Gene

GeneCards Summary for RPS3AP40 Gene

RPS3AP40 (RPS3A Pseudogene 40) is a Pseudogene.

Additional gene information for RPS3AP40 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS3AP40 Gene

Genomics for RPS3AP40 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS3AP40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J067930 Enhancer 0.4 Ensembl 0.7 -4.2 -4246 0.6 IKZF1 EGR2 ZFHX2 HSALNG0085202 RPS3AP40 LOC112268076 lnc-UNC93B1-3 HSALNG0085186 HSALNG0085198 HSALNG0085187 ALDH3B2
GH11J067932 Enhancer 0.2 Ensembl 0.7 -3.6 -3646 0.2 HSALNG0085202 RPS3AP40 LOC112268076 lnc-UNC93B1-3 HSALNG0085186 HSALNG0085198 HSALNG0085187 ALDH3B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS3AP40 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS3AP40 Gene

Latest Assembly
chr11:67,925,607-67,926,455
(GRCh38/hg38)
Size:
849 bases
Orientation:
Minus strand

Previous Assembly
chr11:67,693,078-67,693,926
(GRCh37/hg19 by Entrez Gene)
Size:
849 bases
Orientation:
Minus strand

chr11:67,693,122-67,693,902
(GRCh37/hg19 by Ensembl)
Size:
781 bases
Orientation:
Minus strand

Genomic View for RPS3AP40 Gene

Genes around RPS3AP40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP40 Gene

Proteins for RPS3AP40 Gene

Post-translational modifications for RPS3AP40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP40 Gene

Domains & Families for RPS3AP40 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS3AP40 Gene

Function for RPS3AP40 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP40 Gene

Localization for RPS3AP40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP40 Gene

Pathways & Interactions for RPS3AP40 Gene

PathCards logo

SuperPathways for RPS3AP40 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS3AP40 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS3AP40 Gene

Drugs & Compounds for RPS3AP40 Gene

No Compound Related Data Available

Transcripts for RPS3AP40 Gene

mRNA/cDNA for RPS3AP40 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP40 Gene

No ASD Table

Relevant External Links for RPS3AP40 Gene

GeneLoc Exon Structure for
RPS3AP40

Expression for RPS3AP40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS3AP40 Gene

genes like me logo Genes that share expression patterns with RPS3AP40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP40 Gene

Orthologs for RPS3AP40 Gene

Evolution for RPS3AP40 Gene

ENSEMBL:
Gene Tree for RPS3AP40 (if available)
TreeFam:
Gene Tree for RPS3AP40 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPS3AP40

No data available for Orthologs for RPS3AP40 Gene

Paralogs for RPS3AP40 Gene

No data available for Paralogs for RPS3AP40 Gene

Variants for RPS3AP40 Gene

Additional Variant Information for RPS3AP40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP40
Leiden Open Variation Database (LOVD)
RPS3AP40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP40 Gene

Disorders for RPS3AP40 Gene

No disorders were found for RPS3AP40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP40 Gene

Publications for RPS3AP40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS3AP40 Gene

Products for RPS3AP40 Gene

Sources for RPS3AP40 Gene