Aliases for RPS3AP27 Gene

Aliases for RPS3AP27 Gene

  • RPS3A Pseudogene 27 2 3 5
  • Ribosomal Protein S3a Pseudogene 27 2 3
  • RPS3A_12_850 3
  • RPS3AP27 5

External Ids for RPS3AP27 Gene

Previous GeneCards Identifiers for RPS3AP27 Gene

  • GC07U902584
  • GC07M133418
  • GC07M132756

Summaries for RPS3AP27 Gene

GeneCards Summary for RPS3AP27 Gene

RPS3AP27 (RPS3A Pseudogene 27) is a Pseudogene.

Additional gene information for RPS3AP27 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS3AP27 Gene

Genomics for RPS3AP27 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS3AP27 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J134440 Enhancer 0.3 dbSUPER 4.2 -707.3 -707257 0.8 ZNF140 POLR2A RPS3AP27 ENSG00000273297 lnc-SLC35B4-4 AKR1B1 SLC35B4
GH07J133905 Enhancer 0.2 Ensembl 3.9 -171.6 -171606 1.2 piR-38537-054 EXOC4 RPS3AP27 RF00017-6652 LRGUK
GH07J133742 Enhancer 0.5 Ensembl 0.4 -9.4 -9379 0.4 CTCF REST RAD21 SMC3 RCOR1 ZNF143 CHD2 RPS3AP27 lnc-SLC35B4-5 lnc-LRGUK-4 lnc-LRGUK-5 LRGUK EXOC4
GH07J133746 Enhancer 0.5 Ensembl ENCODE 0.4 -13.2 -13206 1.2 TEAD4 ATF2 RPS3AP27 lnc-SLC35B4-5 lnc-LRGUK-4 lnc-LRGUK-5 LRGUK EXOC4
GH07J133737 Enhancer 0.3 Ensembl 0.7 -3.8 -3806 0.8 ZNF664 EXOC4 RPS3AP27 lnc-SLC35B4-5 lnc-LRGUK-5 lnc-LRGUK-4 LRGUK
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS3AP27 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS3AP27 Gene

Genomic Locations for RPS3AP27 Gene
chr7:133,732,493-133,733,595
(GRCh38/hg38)
Size:
1,103 bases
Orientation:
Minus strand
chr7:133,417,246-133,418,348
(GRCh37/hg19)
Size:
1,103 bases
Orientation:
Minus strand

Genomic View for RPS3AP27 Gene

Genes around RPS3AP27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP27 Gene

Proteins for RPS3AP27 Gene

Post-translational modifications for RPS3AP27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP27 Gene

Domains & Families for RPS3AP27 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS3AP27 Gene

Function for RPS3AP27 Gene

Phenotypes From GWAS Catalog for RPS3AP27 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP27 Gene

Localization for RPS3AP27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP27 Gene

Pathways & Interactions for RPS3AP27 Gene

PathCards logo

SuperPathways for RPS3AP27 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS3AP27 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS3AP27 Gene

Drugs & Compounds for RPS3AP27 Gene

No Compound Related Data Available

Transcripts for RPS3AP27 Gene

mRNA/cDNA for RPS3AP27 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP27 Gene

No ASD Table

Relevant External Links for RPS3AP27 Gene

GeneLoc Exon Structure for
RPS3AP27

Expression for RPS3AP27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS3AP27 Gene

mRNA differential expression in normal tissues according to GTEx for RPS3AP27 Gene

This gene is overexpressed in Pancreas (x10.2) and Thyroid (x4.3).
genes like me logo Genes that share expression patterns with RPS3AP27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP27 Gene

Orthologs for RPS3AP27 Gene

Evolution for RPS3AP27 Gene

ENSEMBL:
Gene Tree for RPS3AP27 (if available)
TreeFam:
Gene Tree for RPS3AP27 (if available)

No data available for Orthologs for RPS3AP27 Gene

Paralogs for RPS3AP27 Gene

No data available for Paralogs for RPS3AP27 Gene

Variants for RPS3AP27 Gene

Additional Variant Information for RPS3AP27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP27 Gene

Disorders for RPS3AP27 Gene

No disorders were found for RPS3AP27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS3AP27 Gene

Publications for RPS3AP27 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS3AP27 Gene

Products for RPS3AP27 Gene

Sources for RPS3AP27 Gene