Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS3AP24 Gene

Subcategory (RNA class) for RPS3AP24 Gene

lncRNA

Aliases for RPS3AP24 Gene

  • Ribosomal Protein S3a Pseudogene 24 2 3 5
  • RPS3A_10_762 3

External Ids for RPS3AP24 Gene

ORGUL Members for RPS3AP24 Gene

Previous GeneCards Identifiers for RPS3AP24 Gene

  • GC06U901586
  • GC06P141082

Summaries for RPS3AP24 Gene

GeneCards Summary for RPS3AP24 Gene

RPS3AP24 (Ribosomal Protein S3a Pseudogene 24) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPS3AP24 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

Additional gene information for RPS3AP24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS3AP24 Gene

Genomics for RPS3AP24 Gene

GeneHancer (GH) Regulatory Elements for RPS3AP24 Gene

Promoters and enhancers for RPS3AP24 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I140605 Enhancer 0.4 FANTOM5 5 -156.2 -156234 0.3 ZNF316 FOXA2 RPS3AP24 LOC105378026 LOC105378027
GH06I140773 Enhancer 1 Ensembl ENCODE 0.4 +13.0 12978 1.3 JUN BACH1 BMI1 BATF IRF4 FOSL1 ZNF335 POLR2A NFATC1 ZNF547 RPS3AP24 GC06P140833 LOC105378027
GH06I140744 Enhancer 0.6 ENCODE 0.4 -16.5 -16470 0.2 JUNB MAFG BACH1 BATF IRF4 MAFF ZNF316 NFE2 EMSY MAFK RPS3AP24 MIR4465 LOC105378027
GH06I140809 Enhancer 0.7 ENCODE 0.2 +48.5 48490 0.2 PKNOX1 CBFB NR2F1 ZBED1 TRIM22 BACH1 JUNB ATF2 ZNF217 TARDBP LOC102723724 GC06P140833 RPS3AP24
GH06I140778 Enhancer 0.3 ENCODE 0.4 +18.0 18045 1.5 NFE2 LOC102723724 RPS3AP24 GC06P140833 LOC105378027
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3AP24 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3AP24 Gene

Genomic Locations for RPS3AP24 Gene
chr6:140,761,529-140,762,262
(GRCh38/hg38)
Size:
734 bases
Orientation:
Plus strand
chr6:141,082,666-141,083,399
(GRCh37/hg19)

Genomic View for RPS3AP24 Gene

Genes around RPS3AP24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP24 Gene

ORGUL Member Location for RPS3AP24 Gene

ORGUL Member Location for RPS3AP24 gene

Proteins for RPS3AP24 Gene

Post-translational modifications for RPS3AP24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP24 Gene

Domains & Families for RPS3AP24 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP24 Gene

Function for RPS3AP24 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP24 Gene

Localization for RPS3AP24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP24 Gene

Pathways & Interactions for RPS3AP24 Gene

SuperPathways for RPS3AP24 Gene

No Data Available

Interacting Proteins for RPS3AP24 Gene

Gene Ontology (GO) - Biological Process for RPS3AP24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP24 Gene

Drugs & Compounds for RPS3AP24 Gene

No Compound Related Data Available

Transcripts for RPS3AP24 Gene

mRNA/cDNA for RPS3AP24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP24 Gene

No ASD Table

Relevant External Links for RPS3AP24 Gene

GeneLoc Exon Structure for
RPS3AP24
ECgene alternative splicing isoforms for
RPS3AP24

Expression for RPS3AP24 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP24 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS3AP24 Gene:

RPS3AP24
genes like me logo Genes that share expression patterns with RPS3AP24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP24 Gene

Orthologs for RPS3AP24 Gene

Evolution for RPS3AP24 Gene

ENSEMBL:
Gene Tree for RPS3AP24 (if available)
TreeFam:
Gene Tree for RPS3AP24 (if available)

No data available for Orthologs for RPS3AP24 Gene

Paralogs for RPS3AP24 Gene

No data available for Paralogs for RPS3AP24 Gene

Variants for RPS3AP24 Gene

Additional Variant Information for RPS3AP24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP24 Gene

Disorders for RPS3AP24 Gene

Additional Disease Information for RPS3AP24

Genetic Association Database
(GAD)

No disorders were found for RPS3AP24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP24 Gene

Publications for RPS3AP24 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Germline genomic variants associated with childhood acute lymphoblastic leukemia. (PMID: 19684603) Treviño LR … Relling MV (Nature genetics 2009) 44 58
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for RPS3AP24 Gene

Sources for RPS3AP24 Gene

Content
Loading form....