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Aliases for RPS3AP21 Gene

Aliases for RPS3AP21 Gene

  • Ribosomal Protein S3a Pseudogene 21 2 3
  • RPS3A_7_600 3
  • AC010468.1 5

External Ids for RPS3AP21 Gene

Previous GeneCards Identifiers for RPS3AP21 Gene

  • GC05M110557
  • GC05M110560

Summaries for RPS3AP21 Gene

GeneCards Summary for RPS3AP21 Gene

RPS3AP21 (Ribosomal Protein S3a Pseudogene 21) is a Pseudogene.

Additional gene information for RPS3AP21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS3AP21 Gene

Genomics for RPS3AP21 Gene

GeneHancer (GH) Regulatory Elements for RPS3AP21 Gene

Promoters and enhancers for RPS3AP21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I111091 Promoter/Enhancer 1.6 Ensembl ENCODE 61 +100.2 100213 2.6 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 WDR36 ENSG00000253613 RPS3AP21 TSLP SLC25A46 TMEM232 BCLAF1P1 STARD4-AS1 GC05P111128
GH05I111753 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 22.2 -563.4 -563359 5.6 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A FEZF1 NREP RPS3AP21 SNORA13 WDR36 BCLAF1P1 RN7SKP57 LOC105379122
GH05I112160 Promoter/Enhancer 1.6 Ensembl ENCODE 24.7 -968.5 -968514 2.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPARGC1A EPB41L4A-AS1 GC05M112153 PIR48450 SNORA13 GC05P112172 RPS3AP21 STARD4-AS1 DCP2 ENSG00000272389 EPB41L4A
GH05I111223 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.3 -38.6 -38587 16.7 HDGF PKNOX1 IRF4 ZNF121 GLIS2 ZNF207 ATF7 KLF7 FOS RUNX3 CAMK4 WDR36 RPS3AP21 ENSG00000249318 TSLP GC05M111236
GH05I111529 Enhancer 1.5 FANTOM5 Ensembl ENCODE 12.4 -337.8 -337772 2.2 HDGF PKNOX1 ATF1 ARNT POLR2B CBX5 GATA2 ZNF143 ATF7 NCOA1 STARD4 SNORA13 RPS3AP21 WDR36 GC05M111479 STARD4-AS1 ENSG00000251099
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS3AP21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS3AP21 Gene

Genomic Locations for RPS3AP21 Gene
chr5:111,192,185-111,193,067
(GRCh38/hg38)
Size:
883 bases
Orientation:
Minus strand
chr5:110,527,883-110,528,765
(GRCh37/hg19)

Genomic View for RPS3AP21 Gene

Genes around RPS3AP21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS3AP21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS3AP21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS3AP21 Gene

Proteins for RPS3AP21 Gene

Post-translational modifications for RPS3AP21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS3AP21 Gene

Domains & Families for RPS3AP21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS3AP21 Gene

Function for RPS3AP21 Gene

Phenotypes From GWAS Catalog for RPS3AP21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS3AP21 Gene

Localization for RPS3AP21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS3AP21 Gene

Pathways & Interactions for RPS3AP21 Gene

SuperPathways for RPS3AP21 Gene

No Data Available

Interacting Proteins for RPS3AP21 Gene

Gene Ontology (GO) - Biological Process for RPS3AP21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS3AP21 Gene

Drugs & Compounds for RPS3AP21 Gene

No Compound Related Data Available

Transcripts for RPS3AP21 Gene

mRNA/cDNA for RPS3AP21 Gene

(12) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS3AP21 Gene

No ASD Table

Relevant External Links for RPS3AP21 Gene

GeneLoc Exon Structure for
RPS3AP21
ECgene alternative splicing isoforms for
RPS3AP21

Expression for RPS3AP21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS3AP21 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS3AP21 Gene



NURSA nuclear receptor signaling pathways regulating expression of RPS3AP21 Gene:

RPS3AP21
genes like me logo Genes that share expression patterns with RPS3AP21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS3AP21 Gene

Orthologs for RPS3AP21 Gene

Evolution for RPS3AP21 Gene

ENSEMBL:
Gene Tree for RPS3AP21 (if available)
TreeFam:
Gene Tree for RPS3AP21 (if available)

No data available for Orthologs for RPS3AP21 Gene

Paralogs for RPS3AP21 Gene

No data available for Paralogs for RPS3AP21 Gene

Variants for RPS3AP21 Gene

Additional Variant Information for RPS3AP21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS3AP21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS3AP21 Gene

Disorders for RPS3AP21 Gene

Additional Disease Information for RPS3AP21

Genetic Association Database
(GAD)

No disorders were found for RPS3AP21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS3AP21 Gene

Publications for RPS3AP21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study. (PMID: 17903306) Newton-Cheh C … Larson MG (BMC medical genetics 2007) 44 58

Products for RPS3AP21 Gene

Sources for RPS3AP21 Gene

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