Aliases for RPS2P6 Gene

Aliases for RPS2P6 Gene

  • Ribosomal Protein S2 Pseudogene 6 2 3 5
  • RPS2_22_1612 3
  • RPS2P6 5

External Ids for RPS2P6 Gene

Previous GeneCards Identifiers for RPS2P6 Gene

  • GC18P066249
  • GC18P068098

Summaries for RPS2P6 Gene

GeneCards Summary for RPS2P6 Gene

RPS2P6 (Ribosomal Protein S2 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS2P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P6 Gene

Genomics for RPS2P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS2P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J070428 Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 -0.1 -100 4.2 GATAD2A ATF7 TFE3 SOX13 NFKBIZ RCOR2 JUND RXRB TCF12 IRF2 LOC112268215 RPS2P6 piR-32927-006 RTTN SOCS6 LARP7P3 lnc-SOCS6-7 LINC01910
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS2P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS2P6 Gene

Genomic Locations for RPS2P6 Gene
chr18:70,430,210-70,431,162
(GRCh38/hg38)
Size:
953 bases
Orientation:
Plus strand
chr18:68,096,396-68,098,397
(GRCh37/hg19)
Size:
2,002 bases
Orientation:
Plus strand

Genomic View for RPS2P6 Gene

Genes around RPS2P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P6 Gene

Proteins for RPS2P6 Gene

Post-translational modifications for RPS2P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P6 Gene

Domains & Families for RPS2P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P6 Gene

Function for RPS2P6 Gene

Phenotypes From GWAS Catalog for RPS2P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P6 Gene

Localization for RPS2P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P6 Gene

Pathways & Interactions for RPS2P6 Gene

PathCards logo

SuperPathways for RPS2P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS2P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS2P6 Gene

Drugs & Compounds for RPS2P6 Gene

No Compound Related Data Available

Transcripts for RPS2P6 Gene

mRNA/cDNA for RPS2P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P6 Gene

No ASD Table

Relevant External Links for RPS2P6 Gene

GeneLoc Exon Structure for
RPS2P6

Expression for RPS2P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P6 Gene

This gene is overexpressed in Testis (x50.4).

Protein differential expression in normal tissues from HIPED for RPS2P6 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS2P6 Gene



Protein tissue co-expression partners for RPS2P6 Gene

genes like me logo Genes that share expression patterns with RPS2P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P6 Gene

Orthologs for RPS2P6 Gene

Evolution for RPS2P6 Gene

ENSEMBL:
Gene Tree for RPS2P6 (if available)
TreeFam:
Gene Tree for RPS2P6 (if available)

No data available for Orthologs for RPS2P6 Gene

Paralogs for RPS2P6 Gene

No data available for Paralogs for RPS2P6 Gene

Variants for RPS2P6 Gene

Additional Variant Information for RPS2P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P6 Gene

Disorders for RPS2P6 Gene

Additional Disease Information for RPS2P6

Genetic Association Database
(GAD)

No disorders were found for RPS2P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P6 Gene

Publications for RPS2P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 41
  3. Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (PMID: 19084217) Benyamin B … Visscher PM (American journal of human genetics 2009) 41
  4. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini SE … Oksenberg JR (Human molecular genetics 2009) 41
  5. A genome-wide association study identifies a locus for nonsyndromic cleft lip with or without cleft palate on 8q24. (PMID: 19656524) Grant SF … Hakonarson H (The Journal of pediatrics 2009) 41

No data available for Mastermind for RPS2P6 Gene

Products for RPS2P6 Gene

Sources for RPS2P6 Gene