RPS2P54 Gene (Pseudogene)

Ribosomal Protein S2 Pseudogene 54

GC20M047170
GIFtS:
6

Aliases for RPS2P54 Gene

Aliases for RPS2P54 Gene

  • Ribosomal Protein S2 Pseudogene 54 2 3
  • RPS2_28_1709 3

External Ids for RPS2P54 Gene

Previous GeneCards Identifiers for RPS2P54 Gene

  • GC20U900441
  • GC20M045790
  • GC20M047161

Summaries for RPS2P54 Gene

GeneCards Summary for RPS2P54 Gene

RPS2P54 (Ribosomal Protein S2 Pseudogene 54) is a Pseudogene.

Additional gene information for RPS2P54 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P54 Gene

Genomics for RPS2P54 Gene

GeneHancer (GH) Regulatory Elements for RPS2P54 Gene

Promoters and enhancers for RPS2P54 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J047156 Enhancer 0.7 Ensembl 0.6 +5.0 4999 0.6 MNT MTA3 NCOA3 ARID3A CREB1 NRF1 CTBP1 POLR2A HES1 GTF2F1 TP53RK ENSG00000229853 LOC100131496 SLC35C2 NCOA3 ENSG00000215450 RPS2P54 piR-37168 EYA2
GH20J047158 Enhancer 0.5 FANTOM5 0.6 +3.1 3074 0.1 CEBPG CTBP1 FOXK2 BMI1 ELF1 ZNF687 ZBTB1 SP1 EYA2 ENSG00000215450 RPS2P54 piR-37168
GH20J047164 Enhancer 0.2 Ensembl 0.6 -2.4 -2401 0.2 ENSG00000215450 MIR3616 RPS2P54 EYA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS2P54 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS2P54 Gene

Genomic Locations for RPS2P54 Gene
chr20:47,160,790-47,161,700
(GRCh38/hg38)
Size:
911 bases
Orientation:
Minus strand
chr20:45,789,429-45,790,339
(GRCh37/hg19)
Size:
911 bases
Orientation:
Minus strand

Genomic View for RPS2P54 Gene

Genes around RPS2P54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P54 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS2P54 Gene

Proteins for RPS2P54 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS2P54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P54 Gene

Domains & Families for RPS2P54 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P54 Gene

Function for RPS2P54 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P54 Gene

Localization for RPS2P54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P54 Gene

Pathways & Interactions for RPS2P54 Gene

PathCards logo

SuperPathways for RPS2P54 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS2P54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P54 Gene

Drugs & Compounds for RPS2P54 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS2P54 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P54 Gene

No ASD Table

Relevant External Links for RPS2P54 Gene

GeneLoc Exon Structure for
RPS2P54
ECgene alternative splicing isoforms for
RPS2P54

No data available for mRNA/cDNA for RPS2P54 Gene

Expression for RPS2P54 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS2P54 Gene

mRNA expression in normal human tissues for RPS2P54 Gene
mRNA expression by GTEx for RPS2P54 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P54 Gene

This gene is overexpressed in Prostate (x5.7), Minor Salivary Gland (x5.1), Nerve - Tibial (x5.0), and Cervix - Endocervix (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RPS2P54 Gene:

RPS2P54
genes like me logo Genes that share expression patterns with RPS2P54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P54 Gene

Orthologs for RPS2P54 Gene

No data available for Orthologs and Evolution for RPS2P54 Gene

Paralogs for RPS2P54 Gene

No data available for Paralogs for RPS2P54 Gene

Variants for RPS2P54 Gene

Additional Variant Information for RPS2P54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P54 Gene

Disorders for RPS2P54 Gene

No disorders were found for RPS2P54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS2P54 Gene

Publications for RPS2P54 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56

No data available for External Links for RPS2P54 Gene

Products for RPS2P54 Gene

Sources for RPS2P54 Gene