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Aliases for RPS2P54 Gene
Aliases for RPS2P54 Gene
External Ids for RPS2P54 Gene
- HGNC: 35835
- Entrez Gene: 100271252
- Ensembl: ENSG00000215450
Previous GeneCards Identifiers for RPS2P54 Gene
- GC20U900441
- GC20M045790
- GC20M047161
- GC20M047170
- GC20M047173
Summaries for RPS2P54 Gene
GeneCards Summary for RPS2P54 Gene
RPS2P54 (Ribosomal Protein S2 Pseudogene 54) is a Pseudogene.
Additional gene information for RPS2P54 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P54 Gene
Genomics for RPS2P54 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for RPS2P54 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH20J047890 | Enhancer | 0.4 | Ensembl | 4.5 | -729.1 | -729101 | 0.4 | ZKSCAN1 ESRRA ZNF512B NCOA3 | SULF2 RPS2P54 lnc-NCOA3-5 RNA5SP486 lnc-NCOA3-4 PREX1 | |
| GH20J047156 | Enhancer | 0.7 | Ensembl | 0.7 | +5.0 | 4999 | 0.6 | CREB1 ARID3A POLR2A GTF2F1 HES1 DDX20 BMI1 ZKSCAN1 CTBP1 BCLAF1 | RPS2P54 piR-37168 ZMYND8 EYA2 | |
| GH20J047158 | Enhancer | 0.6 | FANTOM5 | 0.7 | +3.1 | 3074 | 0.1 | CEBPG ATF7 FOXK2 BMI1 CTBP1 GABPA ELF1 ZBTB1 ZNF687 ESRRA | EYA2 RPS2P54 piR-37168 ZMYND8 | |
| GH20J047164 | Enhancer | 0.2 | Ensembl | 0.7 | -2.4 | -2401 | 0.2 | MIR3616 RPS2P54 ZMYND8 EYA2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around RPS2P54 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for RPS2P54 Gene
Genomic Locations for RPS2P54 Gene
- chr20:47,160,801-47,161,700
- (GRCh38/hg38)
- Size:
- 900 bases
- Orientation:
- Minus strand
- chr20:45,789,429-45,790,339
- (GRCh37/hg19)
- Size:
- 911 bases
- Orientation:
- Minus strand
Genomic View for RPS2P54 Gene
Genes around RPS2P54 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 20q13.1 by HGNC
- 20q13.12 by Entrez Gene
- 20q13.12 by Ensembl
RPS2P54 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for RPS2P54 Gene
Proteins for RPS2P54 Gene
Post-translational modifications for RPS2P54 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPS2P54
- Origene Custom Protein Services for RPS2P54
No data available for DME Specific Peptides for RPS2P54 Gene
Domains & Families for RPS2P54 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P54 Gene
Function for RPS2P54 Gene
Phenotypes From GWAS Catalog for RPS2P54 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RPS2P54 - Select products 50% OFF >
- * RPS2P54 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for RPS2P54
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P54 Gene
Localization for RPS2P54 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P54 Gene
Transcripts for RPS2P54 Gene
mRNA/cDNA for RPS2P54 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000400363 863 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for RPS2P54 - Select products 50% OFF >
- * RPS2P54 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for RPS2P54
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for RPS2P54 Gene
- GeneLoc Exon Structure for
- RPS2P54
Expression for RPS2P54 Gene
mRNA differential expression in normal tissues according to GTEx for RPS2P54 Gene
This gene is overexpressed in Prostate (x5.7), Minor Salivary Gland (x5.1), Nerve - Tibial (x5.0), and Cervix - Endocervix (x4.1).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P54 Gene
Orthologs for RPS2P54 Gene
No data available for Orthologs for RPS2P54 Gene
Paralogs for RPS2P54 Gene
No data available for Paralogs for RPS2P54 Gene
Variants for RPS2P54 Gene
Additional Variant Information for RPS2P54 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- RPS2P54
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P54 Gene
Disorders for RPS2P54 Gene
No disorders were found for RPS2P54 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS2P54 Gene
Publications for RPS2P54 Gene
- Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
No data available for Mastermind for RPS2P54 Gene
Products for RPS2P54 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for RPS2P54
- Origene Custom Protein Services for RPS2P54
- Browse OriGene Inhibitory RNA Products For RPS2P54
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for RPS2P54
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For RPS2P54
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for RPS2P54
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for RPS2P54
- Search GeneCopoeia for miRNA 3'UTR Target clone products for RPS2P54
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for RPS2P54
Sources for RPS2P54 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB