Aliases for RPS2P5 Gene

Aliases for RPS2P5 Gene

  • Ribosomal Protein S2 Pseudogene 5 2 3 5
  • Bcm384 2 3
  • RPS2_20_1284 3
  • RPS2P5 5

External Ids for RPS2P5 Gene

Previous GeneCards Identifiers for RPS2P5 Gene

  • GC12U900536
  • GC12P117169
  • GC12P118684

Summaries for RPS2P5 Gene

GeneCards Summary for RPS2P5 Gene

RPS2P5 (Ribosomal Protein S2 Pseudogene 5) is a Pseudogene.

Additional gene information for RPS2P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P5 Gene

Genomics for RPS2P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS2P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J118246 Promoter 0.4 Ensembl 600.7 +0.2 240 0.6 ATF2 RPS2P5 RF00017-1298 PEBP1 TAOK3
GH12J118058 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.8 -183.8 -183812 7.5 CEBPG CTCF ATF7 PRDM10 ZNF512 IKZF1 ZNF692 RCOR2 POLR2A FOXA1 WSB2 lnc-RFC5-5 lnc-WSB2-1 VSIG10 RFC5 SUDS3 RPS2P5 lnc-WSB2-3
GH12J118236 Enhancer 0.7 ENCODE 0.4 -8.1 -8120 2.8 BACH1 STAT3 TCF12 IKZF2 TRIM22 PKNOX1 EED ARID3A DPF2 RELB PEBP1 SUDS3 RPS2P5 lnc-VSIG10-3 TAOK3
GH12J118219 Enhancer 0.4 Ensembl 0.3 -26.2 -26160 1.4 IKZF2 ZNF366 IKZF1 SUDS3 TAOK3 PEBP1 lnc-VSIG10-3 RPS2P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS2P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS2P5 Gene

Genomic Locations for RPS2P5 Gene
chr12:118,246,061-118,247,002
(GRCh38/hg38)
Size:
942 bases
Orientation:
Plus strand
chr12:118,683,866-118,684,816
(GRCh37/hg19)
Size:
951 bases
Orientation:
Plus strand

Genomic View for RPS2P5 Gene

Genes around RPS2P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P5 Gene

Proteins for RPS2P5 Gene

Post-translational modifications for RPS2P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P5 Gene

Domains & Families for RPS2P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P5 Gene

Function for RPS2P5 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P5 Gene

Localization for RPS2P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P5 Gene

Pathways & Interactions for RPS2P5 Gene

PathCards logo

SuperPathways for RPS2P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS2P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS2P5 Gene

Drugs & Compounds for RPS2P5 Gene

No Compound Related Data Available

Transcripts for RPS2P5 Gene

mRNA/cDNA for RPS2P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P5 Gene

No ASD Table

Relevant External Links for RPS2P5 Gene

GeneLoc Exon Structure for
RPS2P5

Expression for RPS2P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P5 Gene

genes like me logo Genes that share expression patterns with RPS2P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P5 Gene

Orthologs for RPS2P5 Gene

Evolution for RPS2P5 Gene

ENSEMBL:
Gene Tree for RPS2P5 (if available)
TreeFam:
Gene Tree for RPS2P5 (if available)

No data available for Orthologs for RPS2P5 Gene

Paralogs for RPS2P5 Gene

No data available for Paralogs for RPS2P5 Gene

Variants for RPS2P5 Gene

Additional Variant Information for RPS2P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P5 Gene

Disorders for RPS2P5 Gene

Additional Disease Information for RPS2P5

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for RPS2P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P5 Gene

Publications for RPS2P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. Single-nucleotide polymorphisms, acute rejection, and severity of tubulitis in kidney transplantation, accounting for center-to-center variation. (PMID: 21085059) Israni A … DeKAF Investigators (Transplantation 2010) 41

Products for RPS2P5 Gene

Sources for RPS2P5 Gene