Aliases for RPS2P49 Gene

Aliases for RPS2P49 Gene

  • Ribosomal Protein S2 Pseudogene 49 2 3
  • Ribosomal Protein S2 (RPS2) Pseudogene 5
  • RPS2_24_1542 3
  • AC244093.1 5

External Ids for RPS2P49 Gene

Previous GeneCards Identifiers for RPS2P49 Gene

  • GC17U901155
  • GC17M035498

Summaries for RPS2P49 Gene

GeneCards Summary for RPS2P49 Gene

RPS2P49 (Ribosomal Protein S2 Pseudogene 49) is a Pseudogene.

Additional gene information for RPS2P49 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P49 Gene

Genomics for RPS2P49 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS2P49 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J037130 Enhancer 1.4 UCNEbase Ensembl ENCODE CraniofacialAtlas 0.4 +8.0 8027 5.6 ZNF629 PRDM1 ZIC2 PKNOX1 HDAC1 ZNF600 ZBTB44 HES1 FOXK2 OSR2 RPS2P49 lnc-SYNRG-5 AATF C17orf78 ACACA
GH17J037117 Enhancer 1.1 VISTA Ensembl ENCODE 0.4 +22.7 22724 3.4 ZNF629 ZIC2 ZSCAN4 SP1 ZNF561 ZBTB44 FOXA2 ZSCAN5C OSR2 ATF3 RPS2P49 lnc-SYNRG-5 AATF C17orf78 ACACA
GH17J037109 Enhancer 1.2 UCNEbase Ensembl ENCODE 0.3 +31.2 31153 1.1 PRDM1 ZIC2 PATZ1 ZNF600 ZBTB44 TCF7L2 EZH2 ZEB1 ZSCAN5C OSR2 lnc-SYNRG-5 RPS2P49 AATF C17orf78 ACACA
GH17J037123 Enhancer 0.9 UCNEbase Ensembl ENCODE 0.4 +17.2 17223 2 CEBPB SPI1 SMARCA4 GATA2 RPS2P49 lnc-SYNRG-5 AATF C17orf78 ACACA
GH17J037088 Enhancer 1.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.2 +50.1 50051 7.5 PRDM10 RFX1 SCRT2 RUNX3 CTCF ZNF316 MAFF MAFK NR2F2 ELF1 LHX1 C17orf78 lnc-SYNRG-5 RPS2P49 AATF ACACA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS2P49 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS2P49 Gene

Genomic Locations for RPS2P49 Gene
chr17:37,140,569-37,141,424
(GRCh38/hg38)
Size:
856 bases
Orientation:
Minus strand
chr17:35,497,496-35,498,349
(GRCh37/hg19)
Size:
854 bases
Orientation:
Minus strand

Genomic View for RPS2P49 Gene

Genes around RPS2P49 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P49 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P49 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P49 Gene

Proteins for RPS2P49 Gene

Post-translational modifications for RPS2P49 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P49 Gene

Domains & Families for RPS2P49 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P49 Gene

Function for RPS2P49 Gene

Phenotypes From GWAS Catalog for RPS2P49 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P49 Gene

Localization for RPS2P49 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P49 Gene

Pathways & Interactions for RPS2P49 Gene

PathCards logo

SuperPathways for RPS2P49 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS2P49 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS2P49 Gene

Drugs & Compounds for RPS2P49 Gene

No Compound Related Data Available

Transcripts for RPS2P49 Gene

mRNA/cDNA for RPS2P49 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P49 Gene

No ASD Table

Relevant External Links for RPS2P49 Gene

GeneLoc Exon Structure for
RPS2P49

Expression for RPS2P49 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P49 Gene

mRNA expression in normal human tissues for RPS2P49 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P49 Gene

This gene is overexpressed in Prostate (x4.8).
genes like me logo Genes that share expression patterns with RPS2P49: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P49 Gene

Orthologs for RPS2P49 Gene

Evolution for RPS2P49 Gene

ENSEMBL:
Gene Tree for RPS2P49 (if available)
TreeFam:
Gene Tree for RPS2P49 (if available)

No data available for Orthologs for RPS2P49 Gene

Paralogs for RPS2P49 Gene

No data available for Paralogs for RPS2P49 Gene

Variants for RPS2P49 Gene

Additional Variant Information for RPS2P49 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P49

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P49 Gene

Disorders for RPS2P49 Gene

No disorders were found for RPS2P49 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS2P49 Gene

Publications for RPS2P49 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS2P49 Gene

Products for RPS2P49 Gene

Sources for RPS2P49 Gene