Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS2P47 Gene

Aliases for RPS2P47 Gene

  • Ribosomal Protein S2 Pseudogene 47 2 3
  • RPS2_25_1553 3
  • AC002558.1 5

External Ids for RPS2P47 Gene

Previous GeneCards Identifiers for RPS2P47 Gene

  • GC17U901163
  • GC17M045237

Summaries for RPS2P47 Gene

GeneCards Summary for RPS2P47 Gene

RPS2P47 (Ribosomal Protein S2 Pseudogene 47) is a Pseudogene.

Additional gene information for RPS2P47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS2P47 Gene

Genomics for RPS2P47 Gene

GeneHancer (GH) Regulatory Elements for RPS2P47 Gene

Promoters and enhancers for RPS2P47 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I047158 Enhancer 0.4 ENCODE 550.8 +1.8 1788 0.2 ATF3 GTF2B PIR31926 RPS2P47 KANSL1 SP2 MRPL45P2 CDC27 LOC101927060
GH17I047941 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 43.7 -781.9 -781859 2 CLOCK MLX DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 ZNF416 SP3 SP2-AS1 PNPO MRPL45P2 UBE2Z EFCAB13 SP2 ENSG00000264701 ENSG00000266601 CDK5RAP3 RPS2P47
GH17I046189 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 25.9 +966.4 966425 7.6 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 KANSL1 KANSL1-AS1 LINC02210 ENSG00000262372 ARL17A LRRC37A4P ARL17B RPS7P11 RPS2P47 LRRC37A2
GH17I047647 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 19.9 -490.1 -490087 4.8 CLOCK MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 KPNB1 ENSG00000263766 SP2 ENSG00000266601 EFCAB13 ENSG00000264701 MRPL45P2 ENSG00000253347 TBKBP1 RPS2P47
GH17I048011 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 20.8 -853.4 -853433 4.3 HDGF PKNOX1 CLOCK ARNT SIN3A ZNF2 ZBTB7B E2F8 ZNF207 ZNF143 SP2 MRPL45P2 SCRN2 PRR15L ENSG00000264701 UBE2Z EFCAB13 RPS2P47 COPZ2 CDK5RAP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS2P47 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS2P47 Gene

Genomic Locations for RPS2P47 Gene
chr17:47,159,154-47,159,998
(GRCh38/hg38)
Size:
845 bases
Orientation:
Minus strand
chr17:45,236,520-45,237,364
(GRCh37/hg19)

Genomic View for RPS2P47 Gene

Genes around RPS2P47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P47 Gene

Proteins for RPS2P47 Gene

Post-translational modifications for RPS2P47 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P47 Gene

Domains & Families for RPS2P47 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS2P47 Gene

Function for RPS2P47 Gene

Phenotypes From GWAS Catalog for RPS2P47 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P47 Gene

Localization for RPS2P47 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P47 Gene

Pathways & Interactions for RPS2P47 Gene

SuperPathways for RPS2P47 Gene

No Data Available

Interacting Proteins for RPS2P47 Gene

Gene Ontology (GO) - Biological Process for RPS2P47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P47 Gene

Drugs & Compounds for RPS2P47 Gene

No Compound Related Data Available

Transcripts for RPS2P47 Gene

mRNA/cDNA for RPS2P47 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P47 Gene

No ASD Table

Relevant External Links for RPS2P47 Gene

GeneLoc Exon Structure for
RPS2P47
ECgene alternative splicing isoforms for
RPS2P47

Expression for RPS2P47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS2P47 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS2P47 Gene:

RPS2P47
genes like me logo Genes that share expression patterns with RPS2P47: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P47 Gene

Orthologs for RPS2P47 Gene

Evolution for RPS2P47 Gene

ENSEMBL:
Gene Tree for RPS2P47 (if available)
TreeFam:
Gene Tree for RPS2P47 (if available)

No data available for Orthologs for RPS2P47 Gene

Paralogs for RPS2P47 Gene

No data available for Paralogs for RPS2P47 Gene

Variants for RPS2P47 Gene

Additional Variant Information for RPS2P47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P47 Gene

Disorders for RPS2P47 Gene

Additional Disease Information for RPS2P47

No disorders were found for RPS2P47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P47 Gene

Publications for RPS2P47 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS2P47 Gene

Sources for RPS2P47 Gene

Content
Loading form....