Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS2P40 Gene

Aliases for RPS2P40 Gene

  • Ribosomal Protein S2 Pseudogene 40 2 3
  • RPS2_17_1125 3
  • HCG1992539 3
  • AC107956.1 5

External Ids for RPS2P40 Gene

Previous GeneCards Identifiers for RPS2P40 Gene

  • GC11P017207
  • GC11P017209

Summaries for RPS2P40 Gene

GeneCards Summary for RPS2P40 Gene

RPS2P40 (Ribosomal Protein S2 Pseudogene 40) is a Pseudogene.

Additional gene information for RPS2P40 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS2P40 Gene

Genomics for RPS2P40 Gene

GeneHancer (GH) Regulatory Elements for RPS2P40 Gene

Promoters and enhancers for RPS2P40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I017229 Enhancer 0.9 Ensembl ENCODE 550.8 +1.9 1916 0.9 HDGF MEIS2 CTCF PKNOX1 DMAP1 RAD21 CC2D1A FOXK2 ARID2 ZNF143 RPS2P40 OR7E14P GC11M017255 NUCB2 PIR46564
GH11I017207 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 4.9 -19.6 -19613 4.5 HDGF FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B YY1 POLR2B PIK3C2A GC11P017210 GC11P017211 NUCB2 OR7E14P SAAL1 SNORD14A C11orf58 RPL36AP37 RPS13
GH11I017230 Enhancer 0.8 ENCODE 0.8 +2.8 2798 0.2 HDGF PKNOX1 ZNF146 BACH1 CEBPG EBF1 BMI1 BATF IRF4 ZFHX2 OR7E14P RPS2P40 GC11M017255 NUCB2 PIR46564
GH11I017238 Enhancer 0.7 ENCODE 0.4 +10.4 10378 0.2 NCOA3 MXI1 PKNOX1 CLOCK NEUROD1 SIN3A BMI1 RFX5 ZKSCAN1 ZNF507 OR7E14P ABCC8 RPS2P40 PIR46564 GC11M017255 NUCB2
GH11I017239 Enhancer 0.6 ENCODE 0.4 +11.2 11218 0.2 NCOA3 PKNOX1 FOXA1 ZNF217 ZNF316 GATA3 CTBP1 CREB1 ABCC8 RPS2P40 PIR46564 GC11M017255 NUCB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS2P40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS2P40 Gene

Genomic Locations for RPS2P40 Gene
chr11:17,228,251-17,229,198
(GRCh38/hg38)
Size:
948 bases
Orientation:
Plus strand
chr11:17,249,798-17,250,745
(GRCh37/hg19)

Genomic View for RPS2P40 Gene

Genes around RPS2P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P40 Gene

Proteins for RPS2P40 Gene

Post-translational modifications for RPS2P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P40 Gene

Domains & Families for RPS2P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS2P40 Gene

Function for RPS2P40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P40 Gene

Localization for RPS2P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P40 Gene

Pathways & Interactions for RPS2P40 Gene

SuperPathways for RPS2P40 Gene

No Data Available

Interacting Proteins for RPS2P40 Gene

Gene Ontology (GO) - Biological Process for RPS2P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS2P40 Gene

Drugs & Compounds for RPS2P40 Gene

No Compound Related Data Available

Transcripts for RPS2P40 Gene

mRNA/cDNA for RPS2P40 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P40 Gene

No ASD Table

Relevant External Links for RPS2P40 Gene

GeneLoc Exon Structure for
RPS2P40
ECgene alternative splicing isoforms for
RPS2P40

Expression for RPS2P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS2P40 Gene

mRNA differential expression in normal tissues according to GTEx for RPS2P40 Gene

This gene is overexpressed in Lung (x4.7) and Testis (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of RPS2P40 Gene:

RPS2P40
genes like me logo Genes that share expression patterns with RPS2P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P40 Gene

Orthologs for RPS2P40 Gene

Evolution for RPS2P40 Gene

ENSEMBL:
Gene Tree for RPS2P40 (if available)
TreeFam:
Gene Tree for RPS2P40 (if available)

No data available for Orthologs for RPS2P40 Gene

Paralogs for RPS2P40 Gene

No data available for Paralogs for RPS2P40 Gene

Variants for RPS2P40 Gene

Additional Variant Information for RPS2P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P40 Gene

Disorders for RPS2P40 Gene

No disorders were found for RPS2P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS2P40 Gene

Publications for RPS2P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. (PMID: 26362536) Le Sage V … Mouland AJ (Virology journal 2015) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for RPS2P40 Gene

Sources for RPS2P40 Gene

Content
Loading form....