Aliases for RPS2P30 Gene

Aliases for RPS2P30 Gene

  • Ribosomal Protein S2 Pseudogene 30 2 3
  • Ribosomal Protein S2 (RPS2) Pseudogene 5
  • RPS2_10_800 3
  • AC005105.1 5

External Ids for RPS2P30 Gene

Previous GeneCards Identifiers for RPS2P30 Gene

  • GC07U902591

Summaries for RPS2P30 Gene

GeneCards Summary for RPS2P30 Gene

RPS2P30 (Ribosomal Protein S2 Pseudogene 30) is a Pseudogene.

Additional gene information for RPS2P30 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS2P30 Gene

Genomics for RPS2P30 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS2P30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J028611 Enhancer 1 Ensembl ENCODE 0.7 +3.5 3548 2.5 CREB1 ZNF629 PRDM1 ZSCAN4 ZNF600 SCRT2 RBAK KLF7 ZNF10 ZXDB RPS2P30 lnc-TRIL-5 HSALNG0056922 CREB5 TRIL
GH07J028620 Enhancer 1 Ensembl ENCODE 0.4 -5.8 -5764 1.5 CREB1 ATF7 ZNF629 ZNF692 POLR2A BACH1 ZSCAN4 SMAD5 TCF12 IKZF2 CREB5 RPS2P30 lnc-TRIL-5 AC005105 TRIL
GH07J028622 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 -11.2 -11163 8.5 CREB1 CTCF ATF7 ZNF629 FOXA1 RAD21 TRIM22 SCRT2 SIN3A CEBPB CREB5 RPS2P30 lnc-TRIL-5 AC005105 TRIL
GH07J028684 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 -70.7 -70745 5.3 CREB1 ATF7 PRDM10 ZNF629 ZNF512 RFX1 ZNF692 JUND FOXA1 PRDM1 CREB5 AC005105 RPS2P30 lnc-TRIL-5 TRIL
GH07J028607 Enhancer 0.8 Ensembl ENCODE 0.4 +7.7 7697 2.4 IKZF2 TRIM22 DPF2 RELB RUNX3 ZSCAN5C NBN ZFHX2 IKZF1 ZNF189 RPS2P30 lnc-TRIL-5 HSALNG0056922 CREB5 TRIL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS2P30 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS2P30 Gene

Genomic Locations for RPS2P30 Gene
chr7:28,615,097-28,615,888
(GRCh38/hg38)
Size:
792 bases
Orientation:
Minus strand
chr7:28,654,714-28,655,505
(GRCh37/hg19)
Size:
792 bases
Orientation:
Minus strand

Genomic View for RPS2P30 Gene

Genes around RPS2P30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS2P30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS2P30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS2P30 Gene

Proteins for RPS2P30 Gene

Post-translational modifications for RPS2P30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS2P30 Gene

Domains & Families for RPS2P30 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS2P30 Gene

Function for RPS2P30 Gene

Phenotypes From GWAS Catalog for RPS2P30 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS2P30 Gene

Localization for RPS2P30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS2P30 Gene

Pathways & Interactions for RPS2P30 Gene

PathCards logo

SuperPathways for RPS2P30 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS2P30 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS2P30 Gene

Drugs & Compounds for RPS2P30 Gene

No Compound Related Data Available

Transcripts for RPS2P30 Gene

mRNA/cDNA for RPS2P30 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS2P30 Gene

No ASD Table

Relevant External Links for RPS2P30 Gene

GeneLoc Exon Structure for
RPS2P30

Expression for RPS2P30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS2P30 Gene

genes like me logo Genes that share expression patterns with RPS2P30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS2P30 Gene

Orthologs for RPS2P30 Gene

Evolution for RPS2P30 Gene

ENSEMBL:
Gene Tree for RPS2P30 (if available)
TreeFam:
Gene Tree for RPS2P30 (if available)

No data available for Orthologs for RPS2P30 Gene

Paralogs for RPS2P30 Gene

No data available for Paralogs for RPS2P30 Gene

Variants for RPS2P30 Gene

Additional Variant Information for RPS2P30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS2P30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS2P30 Gene

Disorders for RPS2P30 Gene

Additional Disease Information for RPS2P30

Genetic Association Database
(GAD)

No disorders were found for RPS2P30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS2P30 Gene

Publications for RPS2P30 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs JB … Dupuis J (BMC medical genetics 2007) 41

No data available for Mastermind for RPS2P30 Gene

Products for RPS2P30 Gene

Sources for RPS2P30 Gene