Aliases for RPS27P5 Gene

Aliases for RPS27P5 Gene

  • Ribosomal Protein S27 Pseudogene 5 2 3 5
  • Ribosomal Protein S27-Like Pseudogene 3
  • RPS27_4_170 3
  • RPS27P5 5

External Ids for RPS27P5 Gene

Previous GeneCards Identifiers for RPS27P5 Gene

  • GC01U902312
  • GC01P226970
  • GC01P197486

Summaries for RPS27P5 Gene

GeneCards Summary for RPS27P5 Gene

RPS27P5 (Ribosomal Protein S27 Pseudogene 5) is a Pseudogene.

Additional gene information for RPS27P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS27P5 Gene

Genomics for RPS27P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS27P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J226779 Enhancer 0.5 ENCODE dbSUPER 250.7 -1.7 -1716 0.2 PKNOX1 ZNF747 RPS27P5 lnc-PSEN2-3 ITPKB HSALNG0011106 ENSG00000288674 PSEN2
GH01J226780 Enhancer 0.2 Ensembl 250.7 -0.2 -200 1 RPS27P5 lnc-PSEN2-3 ITPKB PSEN2 HSALNG0011106 ENSG00000288674
GH01J226783 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +2.7 2700 2 ZIC2 FEZF1 ZBTB48 SCRT1 ZNF398 ZNF561 L3MBTL2 MZF1 ZSCAN18 ZNF423 ITPKB PSEN2 CDC42BPA RPS27P5 RF00017-440 ENSG00000288674
GH01J226787 Enhancer 0.8 Ensembl dbSUPER 0.4 +5.4 5400 0.2 BCL11A EBF1 BATF ZNF24 IKZF1 HDGF ATF2 JUNB ZBED1 PKNOX1 ITPKB ITPKB-AS1 COQ8A RF00017-440 RPS27P5 PSEN2 ENSG00000288674
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS27P5 Gene

Latest Assembly
chr1:226,781,501-226,781,745
(GRCh38/hg38)
Size:
245 bases
Orientation:
Plus strand

Previous Assembly
chr1:226,969,202-226,969,446
(GRCh37/hg19 by Entrez Gene)
Size:
245 bases
Orientation:
Plus strand

chr1:226,969,202-226,969,445
(GRCh37/hg19 by Ensembl)
Size:
244 bases
Orientation:
Plus strand

Genomic View for RPS27P5 Gene

Genes around RPS27P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P5 Gene

Proteins for RPS27P5 Gene

Post-translational modifications for RPS27P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P5 Gene

Domains & Families for RPS27P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS27P5 Gene

Function for RPS27P5 Gene

Phenotypes From GWAS Catalog for RPS27P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P5 Gene

Localization for RPS27P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27P5 Gene

Pathways & Interactions for RPS27P5 Gene

PathCards logo

SuperPathways for RPS27P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS27P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS27P5 Gene

Drugs & Compounds for RPS27P5 Gene

No Compound Related Data Available

Transcripts for RPS27P5 Gene

mRNA/cDNA for RPS27P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P5 Gene

No ASD Table

Relevant External Links for RPS27P5 Gene

GeneLoc Exon Structure for
RPS27P5

Expression for RPS27P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS27P5 Gene

genes like me logo Genes that share expression patterns with RPS27P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P5 Gene

Orthologs for RPS27P5 Gene

Evolution for RPS27P5 Gene

ENSEMBL:
Gene Tree for RPS27P5 (if available)
TreeFam:
Gene Tree for RPS27P5 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPS27P5

No data available for Orthologs for RPS27P5 Gene

Paralogs for RPS27P5 Gene

No data available for Paralogs for RPS27P5 Gene

Variants for RPS27P5 Gene

Additional Variant Information for RPS27P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P5
Leiden Open Variation Database (LOVD)
RPS27P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P5 Gene

Disorders for RPS27P5 Gene

No disorders were found for RPS27P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS27P5 Gene

Publications for RPS27P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS27P5 Gene

Products for RPS27P5 Gene

Sources for RPS27P5 Gene