Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS27P3 Gene

Subcategory (RNA class) for RPS27P3 Gene

antisense

Aliases for RPS27P3 Gene

  • Ribosomal Protein S27 Pseudogene 3 2 3
  • RPS27_8_1194 3

External Ids for RPS27P3 Gene

ORGUL Members for RPS27P3 Gene

Previous GeneCards Identifiers for RPS27P3 Gene

  • GC12U900535
  • GC12M003320

Summaries for RPS27P3 Gene

GeneCards Summary for RPS27P3 Gene

RPS27P3 (Ribosomal Protein S27 Pseudogene 3) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for RPS27P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27P3 Gene

Genomics for RPS27P3 Gene

GeneHancer (GH) Regulatory Elements for RPS27P3 Gene

Promoters and enhancers for RPS27P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003211 Promoter 0.5 Ensembl 600.7 +0.3 250 0.6 ENSG00000227081 RPS27P3 ENSG00000275850 TSPAN9
GH12J003212 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -2.3 -2348 3 NFIB ZIC2 CTBP1 ZNF10 POLR2A ZNF217 DPF2 GATA3 FOXA1 CTCF RPS27P3 PIR53152 GC12P003266 TSPAN9
GH12J003216 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.5 -6549 5.4 ZSCAN21 SP7 PRDM1 GLIS2 PKNOX1 ZBTB8A ZBTB33 ZIC2 ZNF629 PATZ1 TSPAN9 RPS27P3 PIR53152 GC12P003266
GH12J003224 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 -13.4 -13428 2.4 MAFK ZIC2 SCRT2 FOS POLR2A ZFHX2 JUN MYC MAX EGR2 RPS27P3 GC12P003266 PIR53152 TSPAN9
GH12J003236 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -24.8 -24849 3.2 FOSL2 GLIS2 PATZ1 ZNF341 KLF9 SP2 JUN JUND ZBTB17 FOS TSPAN9 ENSG00000227081 RPS27P3 PIR53152 GC12P003266
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS27P3 Gene

Genomic Locations for RPS27P3 Gene
chr12:3,211,606-3,211,951
(GRCh38/hg38)
Size:
346 bases
Orientation:
Minus strand
chr12:3,320,772-3,321,117
(GRCh37/hg19)
Size:
346 bases
Orientation:
Minus strand

Genomic View for RPS27P3 Gene

Genes around RPS27P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P3 Gene

Proteins for RPS27P3 Gene

Post-translational modifications for RPS27P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P3 Gene

Domains & Families for RPS27P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27P3 Gene

Function for RPS27P3 Gene

Phenotypes From GWAS Catalog for RPS27P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P3 Gene

Localization for RPS27P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27P3 Gene

Pathways & Interactions for RPS27P3 Gene

PathCards logo

SuperPathways for RPS27P3 Gene

No Data Available

Interacting Proteins for RPS27P3 Gene

Gene Ontology (GO) - Biological Process for RPS27P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P3 Gene

Drugs & Compounds for RPS27P3 Gene

No Compound Related Data Available

Transcripts for RPS27P3 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P3 Gene

No ASD Table

Relevant External Links for RPS27P3 Gene

GeneLoc Exon Structure for
RPS27P3
ECgene alternative splicing isoforms for
RPS27P3

No data available for mRNA/cDNA for RPS27P3 Gene

Expression for RPS27P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P3 Gene:

RPS27P3
genes like me logo Genes that share expression patterns with RPS27P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P3 Gene

Orthologs for RPS27P3 Gene

No data available for Orthologs and Evolution for RPS27P3 Gene

Paralogs for RPS27P3 Gene

No data available for Paralogs for RPS27P3 Gene

Variants for RPS27P3 Gene

Additional Variant Information for RPS27P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P3 Gene

Disorders for RPS27P3 Gene

Additional Disease Information for RPS27P3

Genetic Association Database
(GAD)

No disorders were found for RPS27P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P3 Gene

Publications for RPS27P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A scan for positively selected genes in the genomes of humans and chimpanzees. (PMID: 15869325) Nielsen R … Cargill M (PLoS biology 2005) 3 58

No data available for External Links for RPS27P3 Gene

Products for RPS27P3 Gene

Sources for RPS27P3 Gene

Content
Loading form....