RPS27P28 Gene (Pseudogene)

Ribosomal Protein S27 Pseudogene 28

GC18P032779
GIFtS:
6
See more...

Aliases for RPS27P28 Gene

Aliases for RPS27P28 Gene

  • Ribosomal Protein S27 Pseudogene 28 2 3
  • Ribosomal Protein S27 (RPS27) Pseudogene 5
  • RPS27_16_1593 3
  • AC012123.2 5

External Ids for RPS27P28 Gene

Previous GeneCards Identifiers for RPS27P28 Gene

  • GC18U900472
  • GC18P030360

Summaries for RPS27P28 Gene

GeneCards Summary for RPS27P28 Gene

RPS27P28 (Ribosomal Protein S27 Pseudogene 28) is a Pseudogene.

Additional gene information for RPS27P28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS27P28 Gene

Genomics for RPS27P28 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPS27P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH18J032789 Enhancer 0.2 Ensembl 0.4 +10.4 10362 0.4 piR-57460-307 RPS27P28 KLHL14 CCDC178
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27P28 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS27P28 Gene

Latest Assembly
chr18:32,779,039-32,779,286
(GRCh38/hg38)
Size:
248 bases
Orientation:
Plus strand

Previous Assembly
chr18:30,359,002-30,359,249
(GRCh37/hg19 by Entrez Gene)
Size:
248 bases
Orientation:
Plus strand

chr18:30,359,002-30,359,249
(GRCh37/hg19 by Ensembl)
Size:
248 bases
Orientation:
Plus strand

Genomic View for RPS27P28 Gene

Genes around RPS27P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P28 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS27P28 Gene

Proteins for RPS27P28 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for RPS27P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P28 Gene

Domains & Families for RPS27P28 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS27P28 Gene

Function for RPS27P28 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for RPS27P28 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P28 Gene

Localization for RPS27P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27P28 Gene

Pathways & Interactions for RPS27P28 Gene

PathCards logo

SuperPathways for RPS27P28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS27P28 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS27P28 Gene

Drugs & Compounds for RPS27P28 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for RPS27P28 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for RPS27P28 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P28 Gene

No ASD Table

Relevant External Links for RPS27P28 Gene

GeneLoc Exon Structure for
RPS27P28

Expression for RPS27P28 Gene

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  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS27P28 Gene

mRNA expression in normal human tissues for RPS27P28 Gene
mRNA expression by GTEx for RPS27P28 Gene

mRNA differential expression in normal tissues according to GTEx for RPS27P28 Gene

This gene is overexpressed in Thyroid (x21.5), Spleen (x8.6), Cervix - Endocervix (x7.7), Fallopian Tube (x7.6), and Small Intestine - Terminal Ileum (x4.0).
genes like me logo Genes that share expression patterns with RPS27P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P28 Gene

Orthologs for RPS27P28 Gene

Evolution for RPS27P28 Gene

ENSEMBL:
Gene Tree for RPS27P28 (if available)
TreeFam:
Gene Tree for RPS27P28 (if available)

No data available for Orthologs for RPS27P28 Gene

Paralogs for RPS27P28 Gene

No data available for Paralogs for RPS27P28 Gene

Variants for RPS27P28 Gene

Additional Variant Information for RPS27P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P28 Gene

Disorders for RPS27P28 Gene

Additional Disease Information for RPS27P28

Genetic Association Database
(GAD)

No disorders were found for RPS27P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P28 Gene

Publications for RPS27P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 41

ExternalLinks

View latest publications for RPS27P28 gene in Mastermind

Products for RPS27P28 Gene

Sources for RPS27P28 Gene