Aliases for RPS27P20 Gene

Aliases for RPS27P20 Gene

  • Ribosomal Protein S27 Pseudogene 20 2 3 5
  • RPS27_11_1188 3
  • RPS27P20 5

External Ids for RPS27P20 Gene

Previous GeneCards Identifiers for RPS27P20 Gene

  • GC11U901276
  • GC11P129408

Summaries for RPS27P20 Gene

GeneCards Summary for RPS27P20 Gene

RPS27P20 (Ribosomal Protein S27 Pseudogene 20) is a Pseudogene.

Additional gene information for RPS27P20 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS27P20 Gene

Genomics for RPS27P20 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS27P20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J129530 Enhancer 0.7 ENCODE 0.4 -7.1 -7085 0.1 CEBPA SMAD4 RARA TEAD3 DMAP1 THRB BCL6 SOX5 ZNF205 RBPJ HSALNG0088160 RPS27P20 HSALNG0088154 BARX2 TMEM45B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27P20 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS27P20 Gene

Latest Assembly
chr11:129,537,836-129,538,173
(GRCh38/hg38)
Size:
338 bases
Orientation:
Plus strand

Previous Assembly
chr11:129,407,731-129,408,068
(GRCh37/hg19 by Entrez Gene)
Size:
338 bases
Orientation:
Plus strand

chr11:129,407,764-129,408,009
(GRCh37/hg19 by Ensembl)
Size:
246 bases
Orientation:
Plus strand

Genomic View for RPS27P20 Gene

Genes around RPS27P20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P20 Gene

Proteins for RPS27P20 Gene

Post-translational modifications for RPS27P20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P20 Gene

Domains & Families for RPS27P20 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS27P20 Gene

Function for RPS27P20 Gene

Phenotypes From GWAS Catalog for RPS27P20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P20 Gene

Localization for RPS27P20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27P20 Gene

Pathways & Interactions for RPS27P20 Gene

PathCards logo

SuperPathways for RPS27P20 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS27P20 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS27P20 Gene

Drugs & Compounds for RPS27P20 Gene

No Compound Related Data Available

Transcripts for RPS27P20 Gene

mRNA/cDNA for RPS27P20 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P20 Gene

No ASD Table

Relevant External Links for RPS27P20 Gene

GeneLoc Exon Structure for
RPS27P20

Expression for RPS27P20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS27P20 Gene

genes like me logo Genes that share expression patterns with RPS27P20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P20 Gene

Orthologs for RPS27P20 Gene

Evolution for RPS27P20 Gene

ENSEMBL:
Gene Tree for RPS27P20 (if available)
TreeFam:
Gene Tree for RPS27P20 (if available)

No data available for Orthologs for RPS27P20 Gene

Paralogs for RPS27P20 Gene

No data available for Paralogs for RPS27P20 Gene

Variants for RPS27P20 Gene

Additional Variant Information for RPS27P20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P20 Gene

Disorders for RPS27P20 Gene

Additional Disease Information for RPS27P20

Genetic Association Database
(GAD)

No disorders were found for RPS27P20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P20 Gene

Publications for RPS27P20 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. A genome-wide association search for type 2 diabetes genes in African Americans. (PMID: 22238593) Palmer ND … Sladek R (PloS one 2012) 41

Products for RPS27P20 Gene

Sources for RPS27P20 Gene