Aliases for RPS27P1 Gene

Aliases for RPS27P1 Gene

  • Ribosomal Protein S27 Pseudogene 1 2 3 5
  • RPS27_10_1079 3
  • BA108M11.3 3

External Ids for RPS27P1 Gene

Previous GeneCards Identifiers for RPS27P1 Gene

  • GC10U900521
  • GC10P093294
  • GC10P086933

Summaries for RPS27P1 Gene

GeneCards Summary for RPS27P1 Gene

RPS27P1 (Ribosomal Protein S27 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS27P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS27P1 Gene

Genomics for RPS27P1 Gene

GeneHancer (GH) Regulatory Elements for RPS27P1 Gene

Promoters and enhancers for RPS27P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J091540 Enhancer 1 FANTOM5 Ensembl ENCODE 0.6 -3.2 -3231 2.3 POLR2A CHD2 RCOR1 JUND MAX SCRT2 EP300 SCRT1 RAD21 RFX5 PPP1R3C RPS27P1 lnc-HECTD2-2 lnc-PPP1R3C-3 lnc-PPP1R3C-4 HECTD2-AS1
GH10J091552 Enhancer 0.9 Ensembl ENCODE 0.4 +7.6 7649 1.8 CTCF CC2D1A RAD21 ARID2 RXRA REST SMARCC1 GATAD2A ZSCAN4 IRF2 LOC105378433 PPP1R3C HECTD2-AS1-001 RPS27P1 lnc-HECTD2-2 lnc-PPP1R3C-3 HECTD2-AS1
GH10J091511 Enhancer 0.8 Ensembl ENCODE 0.3 -32.6 -32645 1.6 HLF MAFK ZSCAN21 ZSCAN4 CEBPB JUN ZNF316 NFE2 JUND SP1 lnc-PPP1R3C-4 RPS27P1 lnc-HECTD2-2 lnc-PPP1R3C-3 HECTD2 HECTD2-AS1
GH10J091526 Enhancer 0.6 Ensembl 0.4 -18.6 -18551 0.2 LCORL NFIB SP1 RXRA JUND TCF7L2 NR2F2 NFIC RAD21 HNF4A lnc-HECTD2-2 RPS27P1 lnc-PPP1R3C-3 lnc-PPP1R3C-4 HECTD2-AS1
GH10J091519 Enhancer 0.6 Ensembl ENCODE 0.3 -23.9 -23863 2 HLF CEBPB NR2F2 BATF RXRA HECTD2 PPP1R3C lnc-HECTD2-2 RPS27P1 lnc-PPP1R3C-4 lnc-PPP1R3C-3 HECTD2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS27P1 Gene

Genomic Locations for RPS27P1 Gene
chr10:91,544,852-91,545,098
(GRCh38/hg38)
Size:
247 bases
Orientation:
Plus strand
chr10:93,304,609-93,304,855
(GRCh37/hg19)
Size:
247 bases
Orientation:
Plus strand

Genomic View for RPS27P1 Gene

Genes around RPS27P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27P1 Gene

Proteins for RPS27P1 Gene

Post-translational modifications for RPS27P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27P1 Gene

Domains & Families for RPS27P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS27P1 Gene

Function for RPS27P1 Gene

Phenotypes From GWAS Catalog for RPS27P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27P1 Gene

Localization for RPS27P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27P1 Gene

Pathways & Interactions for RPS27P1 Gene

PathCards logo

SuperPathways for RPS27P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS27P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27P1 Gene

Drugs & Compounds for RPS27P1 Gene

No Compound Related Data Available

Transcripts for RPS27P1 Gene

mRNA/cDNA for RPS27P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27P1 Gene

No ASD Table

Relevant External Links for RPS27P1 Gene

GeneLoc Exon Structure for
RPS27P1
ECgene alternative splicing isoforms for
RPS27P1

Expression for RPS27P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27P1 Gene:

RPS27P1
genes like me logo Genes that share expression patterns with RPS27P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27P1 Gene

Orthologs for RPS27P1 Gene

Evolution for RPS27P1 Gene

ENSEMBL:
Gene Tree for RPS27P1 (if available)
TreeFam:
Gene Tree for RPS27P1 (if available)

No data available for Orthologs for RPS27P1 Gene

Paralogs for RPS27P1 Gene

No data available for Paralogs for RPS27P1 Gene

Variants for RPS27P1 Gene

Additional Variant Information for RPS27P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27P1 Gene

Disorders for RPS27P1 Gene

Additional Disease Information for RPS27P1

Genetic Association Database
(GAD)

No disorders were found for RPS27P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27P1 Gene

Publications for RPS27P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56
  2. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. (PMID: 20418890) Tobacco and Genetics Consortium (Nature genetics 2010) 43 56
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 43 56
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 43 56
  5. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 43 56

Products for RPS27P1 Gene

Sources for RPS27P1 Gene