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Aliases for RPS27AP6 Gene

Subcategory (RNA class) for RPS27AP6 Gene

lncRNA

Aliases for RPS27AP6 Gene

  • Ribosomal Protein S27a Pseudogene 6 2 3 5
  • RPS27A_1_97 3

External Ids for RPS27AP6 Gene

ORGUL Members for RPS27AP6 Gene

Previous GeneCards Identifiers for RPS27AP6 Gene

  • GC01U902274

Summaries for RPS27AP6 Gene

GeneCards Summary for RPS27AP6 Gene

RPS27AP6 (Ribosomal Protein S27a Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS27AP6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27AP6 Gene

Genomics for RPS27AP6 Gene

GeneHancer (GH) Regulatory Elements for RPS27AP6 Gene

Promoters and enhancers for RPS27AP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J150879 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 +0.6 593 3.9 ZBTB7A SP1 CEBPB JUN JUND ZBTB17 FOS ATF3 EP300 YY1 GC01M150885 RPS27AP6 ARNT GC01P150878
GH01J150883 Enhancer 0.2 Ensembl 600.7 -1.8 -1818 0.6 GC01M150885 RPS27AP6 HORMAD1 GC01P150885
GH01J150763 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.5 +117.9 117934 5.5 RELA SP1 SMARCA4 ZBED1 IKZF1 POLR2A IKZF2 PKNOX1 SMAD5 TRIM22 CTSS HORMAD1 ARNT RPS27AP6 UBE2D3P3 CTSK RNU6-1309P RNU6-1042P GOLPH3L MCL1
GH01J150667 Enhancer 1 Ensembl ENCODE 10.1 +213.6 213589 2 SP1 HNF1A PPARG ZNF384 RXRA PRDM10 CEBPA RXRB RCOR2 FOXA2 HORMAD1 ARNT GOLPH3L RNU6-1042P ENSA UBE2D3P3 CTSK ADAMTSL4-AS1 ENSG00000237781 ADAMTSL4
GH01J150649 Enhancer 0.9 Ensembl ENCODE 10.5 +231.7 231650 1.7 CREB1 ZIC2 TARDBP RFX1 CTBP1 POLR2A BMI1 ESRRA CHD1 ZNF217 HORMAD1 GOLPH3L RNU6-1042P ENSA CTSK ARNT RPS27AP6 ADAMTSL4-AS1 ENSG00000237781 ADAMTSL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS27AP6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS27AP6 Gene

Genomic Locations for RPS27AP6 Gene
chr1:150,881,232-150,881,683
(GRCh38/hg38)
Size:
452 bases
Orientation:
Minus strand
chr1:150,853,708-150,854,159
(GRCh37/hg19)
Size:
452 bases
Orientation:
Minus strand

Genomic View for RPS27AP6 Gene

Genes around RPS27AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27AP6 Gene

Proteins for RPS27AP6 Gene

Post-translational modifications for RPS27AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27AP6 Gene

Domains & Families for RPS27AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27AP6 Gene

Function for RPS27AP6 Gene

Phenotypes From GWAS Catalog for RPS27AP6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27AP6 Gene

Localization for RPS27AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27AP6 Gene

Pathways & Interactions for RPS27AP6 Gene

PathCards logo

SuperPathways for RPS27AP6 Gene

No Data Available

Interacting Proteins for RPS27AP6 Gene

Gene Ontology (GO) - Biological Process for RPS27AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27AP6 Gene

Drugs & Compounds for RPS27AP6 Gene

No Compound Related Data Available

Transcripts for RPS27AP6 Gene

mRNA/cDNA for RPS27AP6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27AP6 Gene

No ASD Table

Relevant External Links for RPS27AP6 Gene

GeneLoc Exon Structure for
RPS27AP6
ECgene alternative splicing isoforms for
RPS27AP6

Expression for RPS27AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27AP6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS27AP6 Gene

This gene is overexpressed in Testis (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of RPS27AP6 Gene:

RPS27AP6
genes like me logo Genes that share expression patterns with RPS27AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27AP6 Gene

Orthologs for RPS27AP6 Gene

Evolution for RPS27AP6 Gene

ENSEMBL:
Gene Tree for RPS27AP6 (if available)
TreeFam:
Gene Tree for RPS27AP6 (if available)

No data available for Orthologs for RPS27AP6 Gene

Paralogs for RPS27AP6 Gene

No data available for Paralogs for RPS27AP6 Gene

Variants for RPS27AP6 Gene

Additional Variant Information for RPS27AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27AP6 Gene

Disorders for RPS27AP6 Gene

Additional Disease Information for RPS27AP6

Genetic Association Database
(GAD)

No disorders were found for RPS27AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27AP6 Gene

Publications for RPS27AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study identifies a new melanoma susceptibility locus at 1q21.3. (PMID: 21983785) Macgregor S … Hayward NK (Nature genetics 2011) 45 58

No data available for External Links for RPS27AP6 Gene

Products for RPS27AP6 Gene

Sources for RPS27AP6 Gene

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