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Aliases for RPS27AP1 Gene

Aliases for RPS27AP1 Gene

  • Ribosomal Protein S27a Pseudogene 1 2 3 5
  • Ubiquitin And Ribosomal Protein S27a Precursor Pseudogene 3
  • Ubiquitin Carboxyl Extension Protein 80 Pseudogene 3
  • RPS27A_6_1513 3
  • RPS27AP 3

External Ids for RPS27AP1 Gene

Previous GeneCards Identifiers for RPS27AP1 Gene

  • GC17U990298
  • GC17P010104
  • GC17P010362
  • GC17P010102

Summaries for RPS27AP1 Gene

GeneCards Summary for RPS27AP1 Gene

RPS27AP1 (Ribosomal Protein S27a Pseudogene 1) is a Pseudogene.

Additional gene information for RPS27AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS27AP1 Gene

Genomics for RPS27AP1 Gene

GeneHancer (GH) Regulatory Elements for RPS27AP1 Gene

Promoters and enhancers for RPS27AP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I010251 Enhancer 0.7 Ensembl 0.4 -7.2 -7212 0.2 EBF1 BMI1 BATF IRF4 RELA NFATC1 ATF7 ETV6 BCLAF1 IKZF2 RPS27AP1 GAS7
GH17I010216 Enhancer 0.6 Ensembl 0.3 -42.3 -42312 0.4 NCOA3 ESRRA RFX1 BMI1 ZIC2 ZNF664 ZFHX2 GLIS2 GLIS1 MYNN GAS7 RPS27AP1
GH17I010226 Enhancer 0.6 ENCODE 0.3 -31.7 -31704 0.2 CTCF MAZ ZNF654 RB1 BACH1 TRIM22 RAD21 ZSCAN21 ZFP69B ZNF692 GAS7 RPS27AP1
GH17I010247 Enhancer 0.4 ENCODE 0.4 -10.7 -10694 0.2 MAFF ZNF316 MAFK RPS27AP1 GAS7
GH17I010209 Enhancer 0.8 Ensembl ENCODE 0.2 -48.4 -48372 1.3 SMARCE1 ESRRA NEUROD1 DPF2 MNT FOXA1 ZNF217 CTBP1 GATA3 JUND GAS7 RPS27AP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS27AP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS27AP1 Gene

Genomic Locations for RPS27AP1 Gene
chr17:10,258,713-10,259,262
(GRCh38/hg38)
Size:
550 bases
Orientation:
Plus strand
chr17:10,162,030-10,162,579
(GRCh37/hg19)

Genomic View for RPS27AP1 Gene

Genes around RPS27AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS27AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS27AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS27AP1 Gene

Proteins for RPS27AP1 Gene

Post-translational modifications for RPS27AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS27AP1 Gene

Domains & Families for RPS27AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS27AP1 Gene

Function for RPS27AP1 Gene

Phenotypes From GWAS Catalog for RPS27AP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS27AP1 Gene

Localization for RPS27AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS27AP1 Gene

Pathways & Interactions for RPS27AP1 Gene

SuperPathways for RPS27AP1 Gene

No Data Available

Interacting Proteins for RPS27AP1 Gene

Gene Ontology (GO) - Biological Process for RPS27AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS27AP1 Gene

Drugs & Compounds for RPS27AP1 Gene

No Compound Related Data Available

Transcripts for RPS27AP1 Gene

mRNA/cDNA for RPS27AP1 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS27AP1 Gene

No ASD Table

Relevant External Links for RPS27AP1 Gene

GeneLoc Exon Structure for
RPS27AP1
ECgene alternative splicing isoforms for
RPS27AP1

Expression for RPS27AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS27AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS27AP1 Gene:

RPS27AP1
genes like me logo Genes that share expression patterns with RPS27AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS27AP1 Gene

Orthologs for RPS27AP1 Gene

Evolution for RPS27AP1 Gene

ENSEMBL:
Gene Tree for RPS27AP1 (if available)
TreeFam:
Gene Tree for RPS27AP1 (if available)

No data available for Orthologs for RPS27AP1 Gene

Paralogs for RPS27AP1 Gene

No data available for Paralogs for RPS27AP1 Gene

Variants for RPS27AP1 Gene

Additional Variant Information for RPS27AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS27AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS27AP1 Gene

Disorders for RPS27AP1 Gene

Additional Disease Information for RPS27AP1

Genetic Association Database
(GAD)

No disorders were found for RPS27AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS27AP1 Gene

Publications for RPS27AP1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Structure of the human ubiquitin fusion gene Uba80 (RPS27a) and one of its pseudogenes. (PMID: 10772958) Kirschner LS … Stratakis CA (Biochemical and biophysical research communications 2000) 2 3 58

Products for RPS27AP1 Gene

Sources for RPS27AP1 Gene

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