RPS23P6 Gene (Pseudogene)

Ribosomal Protein S23 Pseudogene 6

GC16P012081
GIFtS:
7
See more...

Aliases for RPS23P6 Gene

Aliases for RPS23P6 Gene

  • Ribosomal Protein S23 Pseudogene 6 2 3 5
  • RPS23_4_1473 3
  • RPS23P6 5

External Ids for RPS23P6 Gene

Previous GeneCards Identifiers for RPS23P6 Gene

  • GC16U900947
  • GC16P012176

Summaries for RPS23P6 Gene

GeneCards Summary for RPS23P6 Gene

RPS23P6 (Ribosomal Protein S23 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS23P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS23P6 Gene

Genomics for RPS23P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPS23P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J012077 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 -1.6 -1640 4 ZSCAN4 TCF12 PKNOX1 RUNX3 GATAD2B CTCF ELF1 IKZF1 IRF4 EBF1 RPS23P6 lnc-TNFRSF17-5 GSPT1 SNX29 ENSG00000175604 piR-57176-226 CPPED1
GH16J012081 Enhancer 0.4 ENCODE dbSUPER 600.7 +1.1 1056 0.6 SPI1 RPS23P6 lnc-TNFRSF17-5 GSPT1 ENSG00000175604 piR-57133-218 SNX29 CPPED1
GH16J012075 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 -4.9 -4863 1.3 FOXA2 FOXA1 FOXA3 piR-57176-226 NPIPB2 TNFRSF17 ENSG00000261216 RPS23P6 lnc-TNFRSF17-5 SNX29 CPPED1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS23P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS23P6 Gene

Genomic Locations for RPS23P6 Gene
chr16:12,081,237-12,081,902
(GRCh38/hg38)
Size:
666 bases
Orientation:
Plus strand
chr16:12,175,094-12,175,759
(GRCh37/hg19)
Size:
666 bases
Orientation:
Plus strand

Genomic View for RPS23P6 Gene

Genes around RPS23P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS23P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS23P6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS23P6 Gene

Proteins for RPS23P6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS23P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS23P6 Gene

Domains & Families for RPS23P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS23P6 Gene

Function for RPS23P6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS23P6 Gene

Localization for RPS23P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS23P6 Gene

Pathways & Interactions for RPS23P6 Gene

PathCards logo

SuperPathways for RPS23P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS23P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS23P6 Gene

Drugs & Compounds for RPS23P6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS23P6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS23P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS23P6 Gene

No ASD Table

Relevant External Links for RPS23P6 Gene

GeneLoc Exon Structure for
RPS23P6

Expression for RPS23P6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS23P6 Gene

mRNA expression in normal human tissues for RPS23P6 Gene
mRNA expression by GTEx for RPS23P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS23P6 Gene

This gene is overexpressed in Kidney - Cortex (x6.1).
genes like me logo Genes that share expression patterns with RPS23P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS23P6 Gene

Orthologs for RPS23P6 Gene

Evolution for RPS23P6 Gene

ENSEMBL:
Gene Tree for RPS23P6 (if available)
TreeFam:
Gene Tree for RPS23P6 (if available)

No data available for Orthologs for RPS23P6 Gene

Paralogs for RPS23P6 Gene

No data available for Paralogs for RPS23P6 Gene

Variants for RPS23P6 Gene

Additional Variant Information for RPS23P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS23P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS23P6 Gene

Disorders for RPS23P6 Gene

Additional Disease Information for RPS23P6

Genetic Association Database
(GAD)

No disorders were found for RPS23P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS23P6 Gene

Publications for RPS23P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 41

ExternalLinks

View latest publications for RPS23P6 gene in Mastermind

Products for RPS23P6 Gene

Sources for RPS23P6 Gene