Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPS20P4 Gene

Aliases for RPS20P4 Gene

  • Ribosomal Protein S20 Pseudogene 4 2 3 5
  • Ribosomal Protein S20B (Gene Or Pseudogene) 2 3
  • RPS20_6_627 3
  • RPS20B 3

External Ids for RPS20P4 Gene

Previous HGNC Symbols for RPS20P4 Gene

  • RPS20B

Previous GeneCards Identifiers for RPS20P4 Gene

  • GC05U990050
  • GC05M149429
  • GC05M149381
  • GC05M149403

Summaries for RPS20P4 Gene

GeneCards Summary for RPS20P4 Gene

RPS20P4 (Ribosomal Protein S20 Pseudogene 4) is a Pseudogene.

Additional gene information for RPS20P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P4 Gene

Genomics for RPS20P4 Gene

GeneHancer (GH) Regulatory Elements for RPS20P4 Gene

Promoters and enhancers for RPS20P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I150020 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +0.1 149 3.3 SOX13 JUN RFX5 ZNF316 POLR2A SCRT2 RCOR1 NFE2 FOS RUNX3 GC05M150023 RPS20P4 HMGXB3 TIGD6 CSF1R CAMK2A ENSG00000248696
GH05I149956 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 24.5 +62.4 62404 6.7 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 SLC26A2 PDE6A HMGXB3 TCOF1 ZNF300 ZNF300P1 TIGD6 RPL7P1 CSNK1A1 RPS20P4
GH05I149449 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 24.4 +568.6 568586 8.5 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B YBX1 DMAP1 HMGXB3 TCOF1 TIGD6 RPL7P1 RPS20P4 CARMN CSNK1A1 PDGFRB RPS14 ARHGEF37
GH05I149999 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.5 +21.0 20983 3.5 CLOCK ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 HMGXB3 TIGD6 ZNF300P1 TCOF1 RPS20P4 RPL7P1 ZNF300 CAMK2A
GH05I149209 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 19.3 +808.2 808213 8.5 ZNF493 ZNF529 ZFP64 BMI1 ZNF354C RCOR1 FOS ZNF680 ZNF654 ZBTB11 HMGXB3 FBXO38 ENSG00000251330 AFAP1L1 TIGD6 LOC102546294 RPS20P4 RPL7P1 ENSG00000248647 ENSG00000253406
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P4 Gene

Genomic Locations for RPS20P4 Gene
chr5:150,021,527-150,022,053
(GRCh38/hg38)
Size:
527 bases
Orientation:
Minus strand
chr5:149,401,090-149,401,616
(GRCh37/hg19)

Genomic View for RPS20P4 Gene

Genes around RPS20P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P4 Gene

Proteins for RPS20P4 Gene

Post-translational modifications for RPS20P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P4 Gene

Domains & Families for RPS20P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P4 Gene

Function for RPS20P4 Gene

Phenotypes From GWAS Catalog for RPS20P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P4 Gene

Localization for RPS20P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P4 Gene

Pathways & Interactions for RPS20P4 Gene

SuperPathways for RPS20P4 Gene

No Data Available

Interacting Proteins for RPS20P4 Gene

Gene Ontology (GO) - Biological Process for RPS20P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P4 Gene

Drugs & Compounds for RPS20P4 Gene

No Compound Related Data Available

Transcripts for RPS20P4 Gene

mRNA/cDNA for RPS20P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P4 Gene

No ASD Table

Relevant External Links for RPS20P4 Gene

GeneLoc Exon Structure for
RPS20P4
ECgene alternative splicing isoforms for
RPS20P4

Expression for RPS20P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P4 Gene:

RPS20P4
genes like me logo Genes that share expression patterns with RPS20P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P4 Gene

Orthologs for RPS20P4 Gene

Evolution for RPS20P4 Gene

ENSEMBL:
Gene Tree for RPS20P4 (if available)
TreeFam:
Gene Tree for RPS20P4 (if available)

No data available for Orthologs for RPS20P4 Gene

Paralogs for RPS20P4 Gene

No data available for Paralogs for RPS20P4 Gene

Variants for RPS20P4 Gene

Additional Variant Information for RPS20P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P4 Gene

Disorders for RPS20P4 Gene

No disorders were found for RPS20P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P4 Gene

Publications for RPS20P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Ribosomal protein gene sequences map to human chromosomes 5, 8, and 17. (PMID: 3459254) Nakamichi NN … Roufa DJ (Somatic cell and molecular genetics 1986) 3 58

Products for RPS20P4 Gene

Sources for RPS20P4 Gene

Content
Loading form....