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RPS20P35 Gene(Pseudogene)

Ribosomal Protein S20 Pseudogene 35

GCID:
GC17P038856
GIFtS:
11
Genes Participants
UDN Logo

Aliases for RPS20P35 Gene

Aliases for RPS20P35 Gene

  • Ribosomal Protein S20 Pseudogene 35 2 3
  • RPS20_18_1544 3

External Ids for RPS20P35 Gene

Previous GeneCards Identifiers for RPS20P35 Gene

  • GC17U901139
  • GC17P037012

Summaries for RPS20P35 Gene

GeneCards Summary for RPS20P35 Gene

RPS20P35 (Ribosomal Protein S20 Pseudogene 35) is a Pseudogene.

Additional gene information for RPS20P35 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P35 Gene

Genomics for RPS20P35 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for RPS20P35 Gene

Promoters and enhancers for RPS20P35 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17I038850 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 556.6 -1.7 -1696 5.2 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A SNORA21 RPL23 RPS20P35 GC17M038850 GC17M038858 GC17M038862 GC17M038872 GC17M038875 GC17P038858 PIR38457
GH17I038876 Enhancer 1.4 Ensembl ENCODE dbSUPER 13 +27.0 26955 11.1 SMAD1 ARNT ZFP64 ARID4B FEZF1 GLI4 YY1 ETS1 GLIS2 RUNX3 SNORA21 MED1 RPL23 RPS20P35 SNORA21B C17orf98 CWC25 PSMB3 LASP1 PCGF2
GH17I038895 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.5 +44.2 44223 7.7 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A ZNF766 FOS JUNB SNORA21 MED1 LASP1 RPS20P35 SNORA21B RPL23 LOC105371762 CWC25 LINC00672 ENSG00000266588
GH17I038889 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.3 +37.1 37103 5 HDAC1 ZFP64 ZSCAN4 RAD21 TCF12 GATA2 EGR1 SCRT2 EGR2 RXRA LASP1 RPL23 RPS20P35 SNORA21 SNORA21B CWC25 PIP4K2B PSMB3 GC17M038893
GH17I038867 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5 +16.5 16509 9.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 ZNF548 SP3 LASP1 MED1 CDK12 SNORA21 LOC105371762 RPL23 CWC25 PSMB3 SNORA21B C17orf98
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P35 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P35 Gene

Genomic Locations for RPS20P35 Gene
chr17:38,855,194-38,855,724
(GRCh38/hg38)
Size:
531 bases
Orientation:
Plus strand
chr17:37,011,447-37,011,957
(GRCh37/hg19)

Genomic View for RPS20P35 Gene

Genes around RPS20P35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P35 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS20P35 Gene

Proteins for RPS20P35 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS20P35 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P35 Gene

Domains & Families for RPS20P35 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P35 Gene

Function for RPS20P35 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPS20P35 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P35 Gene

Localization for RPS20P35 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P35 Gene

Pathways & Interactions for RPS20P35 Gene

SuperPathways for RPS20P35 Gene

PathCards logo More details on SuperPathways for RPS20P35
No Data Available

Interacting Proteins for RPS20P35 Gene

Gene Ontology (GO) - Biological Process for RPS20P35 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P35 Gene

Drugs & Compounds for RPS20P35 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS20P35 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS20P35 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P35 Gene

No ASD Table

Relevant External Links for RPS20P35 Gene

GeneLoc Exon Structure for
RPS20P35
ECgene alternative splicing isoforms for
RPS20P35

Expression for RPS20P35 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P35 Gene

mRNA expression in normal human tissues for RPS20P35 Gene
mRNA expression by GTEx for RPS20P35 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P35 Gene

This gene is overexpressed in Testis (x14.6).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P35 Gene:

RPS20P35
genes like me logo Genes that share expression patterns with RPS20P35: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P35 Gene

Orthologs for RPS20P35 Gene

Evolution for RPS20P35 Gene

ENSEMBL:
Gene Tree for RPS20P35 (if available)
TreeFam:
Gene Tree for RPS20P35 (if available)

No data available for Orthologs for RPS20P35 Gene

Paralogs for RPS20P35 Gene

No data available for Paralogs for RPS20P35 Gene

Variants for RPS20P35 Gene

Additional Variant Information for RPS20P35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P35 Gene

Disorders for RPS20P35 Gene

No disorders were found for RPS20P35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P35 Gene

Publications for RPS20P35 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P35 Gene

Sources for RPS20P35 Gene

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