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Aliases for RPS20P33 Gene

Subcategory (RNA class) for RPS20P33 Gene

lncRNA

Aliases for RPS20P33 Gene

  • Ribosomal Protein S20 Pseudogene 33 2 3 5
  • RPS20_16_1416 3

External Ids for RPS20P33 Gene

ORGUL Members for RPS20P33 Gene

Previous GeneCards Identifiers for RPS20P33 Gene

  • GC14U900926
  • GC14P105841

Summaries for RPS20P33 Gene

GeneCards Summary for RPS20P33 Gene

RPS20P33 (Ribosomal Protein S20 Pseudogene 33) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS20P33 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P33 Gene

Genomics for RPS20P33 Gene

GeneHancer (GH) Regulatory Elements for RPS20P33 Gene

Promoters and enhancers for RPS20P33 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J105375 Enhancer 0.5 ENCODE 650.7 +1.3 1301 0.2 ZNF766 PKNOX1 ZSCAN5C SCRT2 EBF1 ZIC2 MYC RPS20P33 GC14P105395 PACS2 GC14M105345
GH14J104676 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -694.3 -694294 7.6 FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SLC30A9 ZNF766 ENSG00000256050 XRCC3 MTA1 ENSG00000257270 RPS20P33 GPR132 ENSG00000270108 PACS2 INF2 AKT1
GH14J104665 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -708.1 -708108 2.9 HDGF FOXA2 YBX1 DMAP1 ZBTB7B ZNF207 FOS SP5 ZHX2 ZNF662 LINC02280 MTA1 XRCC3 ENSG00000257270 CDCA4 LINC00638 BRF1 ENSG00000270591 TMEM121 RPS20P33
GH14J105090 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 11.8 -282.2 -282152 4.4 HDGF PKNOX1 FOXA2 ZFP64 SIN3A ZNF2 YY1 ZNF213 ZNF207 ZNF143 LINC02298 MTA1 GPR132 RPS20P33 CDCA4 BRF1
GH14J105566 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 11.8 +195.1 195112 6.2 HDGF ZNF133 NEUROD1 YBX1 GLI4 ZNF48 ZNF2 ZBTB7B GLIS2 ZNF207 MTA1 ENSG00000257270 CDCA4 ENSG00000225200 IGHVIII-11-1 ENSG00000271201 IGHVII-33-1 HOMER2P2 HOMER2P1 IGHV3-42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS20P33 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P33 Gene

Genomic Locations for RPS20P33 Gene
chr14:105,374,618-105,374,971
(GRCh38/hg38)
Size:
354 bases
Orientation:
Plus strand
chr14:105,840,955-105,841,308
(GRCh37/hg19)
Size:
354 bases
Orientation:
Plus strand

Genomic View for RPS20P33 Gene

Genes around RPS20P33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P33 Gene

Function for RPS20P33 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P33 Gene

Localization for RPS20P33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P33 Gene

Pathways & Interactions for RPS20P33 Gene

SuperPathways for RPS20P33 Gene

No Data Available

Interacting Proteins for RPS20P33 Gene

Gene Ontology (GO) - Biological Process for RPS20P33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P33 Gene

Drugs & Compounds for RPS20P33 Gene

No Compound Related Data Available

Transcripts for RPS20P33 Gene

mRNA/cDNA for RPS20P33 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P33 Gene

No ASD Table

Relevant External Links for RPS20P33 Gene

GeneLoc Exon Structure for
RPS20P33
ECgene alternative splicing isoforms for
RPS20P33

Expression for RPS20P33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P33 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P33 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P33 Gene:

RPS20P33
genes like me logo Genes that share expression patterns with RPS20P33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P33 Gene

Orthologs for RPS20P33 Gene

Evolution for RPS20P33 Gene

ENSEMBL:
Gene Tree for RPS20P33 (if available)
TreeFam:
Gene Tree for RPS20P33 (if available)

No data available for Orthologs for RPS20P33 Gene

Paralogs for RPS20P33 Gene

No data available for Paralogs for RPS20P33 Gene

Variants for RPS20P33 Gene

Additional Variant Information for RPS20P33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P33 Gene

Disorders for RPS20P33 Gene

No disorders were found for RPS20P33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P33 Gene

Publications for RPS20P33 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P33 Gene

Sources for RPS20P33 Gene

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