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Aliases for RPS20P28 Gene

Subcategory (RNA class) for RPS20P28 Gene

lncRNA

Aliases for RPS20P28 Gene

  • Ribosomal Protein S20 Pseudogene 28 2 3
  • RPS20_13_1202 3
  • AC006511.1 5

External Ids for RPS20P28 Gene

ORGUL Members for RPS20P28 Gene

Previous GeneCards Identifiers for RPS20P28 Gene

  • GC12U901117
  • GC12M008148
  • GC12M008149

Summaries for RPS20P28 Gene

GeneCards Summary for RPS20P28 Gene

RPS20P28 (Ribosomal Protein S20 Pseudogene 28) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS20P28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P28 Gene

Genomics for RPS20P28 Gene

GeneHancer (GH) Regulatory Elements for RPS20P28 Gene

Promoters and enhancers for RPS20P28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I007993 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.1 -101 3 HDGF PKNOX1 ARNT SIN3A ZNF2 IRF4 ARID2 ZNF207 ZNF143 ATF7 RPS20P28 FOXJ2 DPPA3 HSPD1P12 RIMKLB GC12M007989
GH12I007989 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 +4.4 4444 2.9 HDGF HDAC1 TCF12 ELK4 REST MEF2D NFIC KLF16 SMARCA4 IKZF1 FOXJ2 HSPD1P12 POU5F1P3 RPS20P28 ENSG00000206636 GC12M007989
GH12I007986 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +8.3 8266 1.4 HDAC1 KLF1 KLF17 CEBPG CTBP1 GATA3 POLR3A TCF7L2 STAT1 RFX1 FOXJ2 HSPD1P12 NECAP1 RPS20P28 ENSG00000206636
GH12I007976 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +17.3 17322 1.9 HDGF RFX1 TRIM22 IKZF1 NBN MLLT1 PRDM10 IKZF2 SPI1 ENSG00000206636 GC12P007976 RPS20P28
GH12I007982 Enhancer 0.7 ENCODE 0.4 +12.6 12634 0.2 SOX13 FOXA2 SAP130 ARID4B SIN3A TEAD3 FOXK2 RCOR1 CREM TCF7L2 ENSG00000206636 RPS20P28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P28 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P28 Gene

Genomic Locations for RPS20P28 Gene
chr12:7,994,770-7,995,084
(GRCh38/hg38)
Size:
315 bases
Orientation:
Minus strand
chr12:8,147,366-8,147,680
(GRCh37/hg19)

Genomic View for RPS20P28 Gene

Genes around RPS20P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P28 Gene

Proteins for RPS20P28 Gene

Post-translational modifications for RPS20P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P28 Gene

Domains & Families for RPS20P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P28 Gene

Function for RPS20P28 Gene

Phenotypes From GWAS Catalog for RPS20P28 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P28 Gene

Localization for RPS20P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P28 Gene

Pathways & Interactions for RPS20P28 Gene

SuperPathways for RPS20P28 Gene

No Data Available

Interacting Proteins for RPS20P28 Gene

Gene Ontology (GO) - Biological Process for RPS20P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P28 Gene

Drugs & Compounds for RPS20P28 Gene

No Compound Related Data Available

Transcripts for RPS20P28 Gene

mRNA/cDNA for RPS20P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P28 Gene

No ASD Table

Relevant External Links for RPS20P28 Gene

GeneLoc Exon Structure for
RPS20P28
ECgene alternative splicing isoforms for
RPS20P28

Expression for RPS20P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P28 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P28 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x9.6) and Brain - Cerebellum (x8.8).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P28 Gene:

RPS20P28
genes like me logo Genes that share expression patterns with RPS20P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P28 Gene

Orthologs for RPS20P28 Gene

Evolution for RPS20P28 Gene

ENSEMBL:
Gene Tree for RPS20P28 (if available)
TreeFam:
Gene Tree for RPS20P28 (if available)

No data available for Orthologs for RPS20P28 Gene

Paralogs for RPS20P28 Gene

No data available for Paralogs for RPS20P28 Gene

Variants for RPS20P28 Gene

Additional Variant Information for RPS20P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P28 Gene

Disorders for RPS20P28 Gene

No disorders were found for RPS20P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS20P28 Gene

Publications for RPS20P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P28 Gene

Sources for RPS20P28 Gene

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