Aliases for RPS20P25 Gene

Aliases for RPS20P25 Gene

  • Ribosomal Protein S20 Pseudogene 25 2 3 5
  • RPS20_13_989 3

External Ids for RPS20P25 Gene

Previous GeneCards Identifiers for RPS20P25 Gene

  • GC09U901241
  • GC09P084026

Summaries for RPS20P25 Gene

GeneCards Summary for RPS20P25 Gene

RPS20P25 (Ribosomal Protein S20 Pseudogene 25) is a Pseudogene.

Additional gene information for RPS20P25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS20P25 Gene

Genomics for RPS20P25 Gene

GeneHancer (GH) Regulatory Elements for RPS20P25 Gene

Promoters and enhancers for RPS20P25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J081409 Promoter/Enhancer 0.8 Ensembl ENCODE 750.6 +0.1 139 1.3 FOSL2 CTBP1 FOS DPF2 ZNF217 FOXA1 SMARCE1 RPS20P25 lnc-SPATA31D4-10 lnc-SPATA31D4-13
GH09J081412 Enhancer 0.3 ENCODE 750.6 +1.9 1872 0.1 FOS RPS20P25 lnc-SPATA31D4-10 lnc-SPATA31D4-13
GH09J081410 Enhancer 0.3 ENCODE 750.6 -1.2 -1158 0.2 ATF2 RPS20P25 lnc-SPATA31D4-10 lnc-TLE1-4
GH09J081394 Enhancer 1.7 VISTA UCNEbase Ensembl ENCODE 0.4 -14.4 -14379 3.8 CTBP1 HLF RAD21 ZNF121 SP1 NCOA3 SP7 PKNOX1 RXRA ZBTB8A lnc-SPATA31D4-10 RPS20P25 lnc-TLE1-4
GH09J081388 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.6 -19579 4.6 SIN3A ZNF217 ZBTB33 SP7 POLR2A PRDM10 CTBP1 ZNF629 ATF3 SP1 lnc-SPATA31D4-10 lnc-TLE1-4 RPS20P25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS20P25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P25 Gene

Genomic Locations for RPS20P25 Gene
chr9:81,410,279-81,410,633
(GRCh38/hg38)
Size:
355 bases
Orientation:
Plus strand
chr9:84,025,194-84,025,548
(GRCh37/hg19)
Size:
355 bases
Orientation:
Plus strand

Genomic View for RPS20P25 Gene

Genes around RPS20P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P25 Gene

Proteins for RPS20P25 Gene

Post-translational modifications for RPS20P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P25 Gene

Domains & Families for RPS20P25 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS20P25 Gene

Function for RPS20P25 Gene

Phenotypes From GWAS Catalog for RPS20P25 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P25 Gene

Localization for RPS20P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P25 Gene

Pathways & Interactions for RPS20P25 Gene

PathCards logo

SuperPathways for RPS20P25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS20P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P25 Gene

Drugs & Compounds for RPS20P25 Gene

No Compound Related Data Available

Transcripts for RPS20P25 Gene

mRNA/cDNA for RPS20P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P25 Gene

No ASD Table

Relevant External Links for RPS20P25 Gene

GeneLoc Exon Structure for
RPS20P25
ECgene alternative splicing isoforms for
RPS20P25

Expression for RPS20P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS20P25 Gene:

RPS20P25
genes like me logo Genes that share expression patterns with RPS20P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P25 Gene

Orthologs for RPS20P25 Gene

Evolution for RPS20P25 Gene

ENSEMBL:
Gene Tree for RPS20P25 (if available)
TreeFam:
Gene Tree for RPS20P25 (if available)

No data available for Orthologs for RPS20P25 Gene

Paralogs for RPS20P25 Gene

No data available for Paralogs for RPS20P25 Gene

Variants for RPS20P25 Gene

Additional Variant Information for RPS20P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P25 Gene

Disorders for RPS20P25 Gene

Additional Disease Information for RPS20P25

Genetic Association Database
(GAD)

No disorders were found for RPS20P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS20P25 Gene

Publications for RPS20P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 56
  2. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 43 56
  3. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 43 56

No data available for External Links for RPS20P25 Gene

Products for RPS20P25 Gene

Sources for RPS20P25 Gene