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Aliases for RPS20P22 Gene

Subcategory (RNA class) for RPS20P22 Gene

lncRNA

Aliases for RPS20P22 Gene

  • Ribosomal Protein S20 Pseudogene 22 2 3 5
  • RPS20_8_895 3

External Ids for RPS20P22 Gene

ORGUL Members for RPS20P22 Gene

Previous GeneCards Identifiers for RPS20P22 Gene

  • GC08U901142
  • GC08M038292

Summaries for RPS20P22 Gene

GeneCards Summary for RPS20P22 Gene

RPS20P22 (Ribosomal Protein S20 Pseudogene 22) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPS20P22 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS20P22 Gene

Genomics for RPS20P22 Gene

GeneHancer (GH) Regulatory Elements for RPS20P22 Gene

Promoters and enhancers for RPS20P22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I038435 Enhancer 0.7 ENCODE dbSUPER 550.8 -0.9 -919 2.3 ATF1 POLR2A CEBPG ATF2 RPS20P22 FGFR1 LOC102723716 LETM2 TACC1 DDHD2
GH08I038434 Enhancer 0.3 ENCODE 550.8 +0.9 928 0.8 POLR2A RPS20P22 DDHD2 FGFR1 LOC102723716 LETM2 TACC1 ENSG00000255201
GH08I037693 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 38.7 +738.1 738094 7.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 ZNF703 ERLIN2 ADGRA2 DDHD2 RPS20P22 ENSG00000255201 LOC728024 FGFR1 LOC102723716 NSD3
GH08I038379 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 27.1 +52.1 52132 8.1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ZNF263 SP3 NFYC NSD3 LETM2 ENSG00000272092 DDHD2 RPS20P22 ERLIN2 ASH2L TM2D2 ENSG00000255201 LOC102723716
GH08I037889 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.2 +537.8 537757 17.5 CLOCK ZFP64 FEZF1 DMAP1 IRF4 ZNF213 E2F8 SP3 ZC3H11A MEF2D RAB11FIP1 ENSG00000255201 ADGRA2 DDHD2 NSD3 ERLIN2 LOC728024 FGFR1 RPS20P22 LETM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS20P22 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS20P22 Gene

Genomic Locations for RPS20P22 Gene
chr8:38,434,337-38,435,664
(GRCh38/hg38)
Size:
1,328 bases
Orientation:
Minus strand
chr8:38,291,865-38,293,182
(GRCh37/hg19)

Genomic View for RPS20P22 Gene

Genes around RPS20P22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS20P22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS20P22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS20P22 Gene

Proteins for RPS20P22 Gene

Post-translational modifications for RPS20P22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS20P22 Gene

Domains & Families for RPS20P22 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS20P22 Gene

Function for RPS20P22 Gene

Phenotypes From GWAS Catalog for RPS20P22 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS20P22 Gene

Localization for RPS20P22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS20P22 Gene

Pathways & Interactions for RPS20P22 Gene

SuperPathways for RPS20P22 Gene

No Data Available

Interacting Proteins for RPS20P22 Gene

Gene Ontology (GO) - Biological Process for RPS20P22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS20P22 Gene

Drugs & Compounds for RPS20P22 Gene

No Compound Related Data Available

Transcripts for RPS20P22 Gene

mRNA/cDNA for RPS20P22 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS20P22 Gene

No ASD Table

Relevant External Links for RPS20P22 Gene

GeneLoc Exon Structure for
RPS20P22
ECgene alternative splicing isoforms for
RPS20P22

Expression for RPS20P22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS20P22 Gene

mRNA differential expression in normal tissues according to GTEx for RPS20P22 Gene

This gene is overexpressed in Pancreas (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of RPS20P22 Gene:

RPS20P22
genes like me logo Genes that share expression patterns with RPS20P22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS20P22 Gene

Orthologs for RPS20P22 Gene

Evolution for RPS20P22 Gene

ENSEMBL:
Gene Tree for RPS20P22 (if available)
TreeFam:
Gene Tree for RPS20P22 (if available)

No data available for Orthologs for RPS20P22 Gene

Paralogs for RPS20P22 Gene

No data available for Paralogs for RPS20P22 Gene

Variants for RPS20P22 Gene

Additional Variant Information for RPS20P22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS20P22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS20P22 Gene

Disorders for RPS20P22 Gene

Additional Disease Information for RPS20P22

Genetic Association Database
(GAD)

No disorders were found for RPS20P22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS20P22 Gene

Publications for RPS20P22 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPS20P22 Gene

Sources for RPS20P22 Gene

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