Aliases for RPS18P3 Gene

Aliases for RPS18P3 Gene

  • Ribosomal Protein S18 Pseudogene 3 2 3
  • Ribosomal Protein S18 (RPS18) Pseudogene 5
  • RPS18_2_171 3
  • AL606462.1 5

External Ids for RPS18P3 Gene

Previous GeneCards Identifiers for RPS18P3 Gene

  • GC01P225686
  • GC01P227619

Summaries for RPS18P3 Gene

GeneCards Summary for RPS18P3 Gene

RPS18P3 (Ribosomal Protein S18 Pseudogene 3) is a Pseudogene.

Additional gene information for RPS18P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS18P3 Gene

Genomics for RPS18P3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS18P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J227431 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.6 1565 1.5 MYC NCOR1 ZNF600 IKZF1 ZNF592 ZSCAN16 NFIC ZBTB10 REST HES1 BTF3P9 RPS18P3 CICP26 ZNF678 C1orf35 CDC42BPA H3-4 JMJD4 PSEN2 LINC01641
GH01J227427 Enhancer 1 ENCODE CraniofacialAtlas dbSUPER 250.7 -1.1 -1131 3.5 NCOR1 IKZF1 JUND ZNF217 TAL1 TEAD3 SKIL SMARCA4 TCF12 ATF4 HSALNG0011139 RPS18P3 CDC42BPA LINC01641 COQ8A SNAP47 ENSG00000269934 ZNF678 L13304-003
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS18P3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS18P3 Gene

Latest Assembly
chr1:227,430,482-227,431,020
(GRCh38/hg38)
Size:
539 bases
Orientation:
Plus strand

Previous Assembly
chr1:227,618,183-227,618,721
(GRCh37/hg19 by Entrez Gene)
Size:
539 bases
Orientation:
Plus strand

chr1:227,618,227-227,618,677
(GRCh37/hg19 by Ensembl)
Size:
451 bases
Orientation:
Plus strand

Genomic View for RPS18P3 Gene

Genes around RPS18P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS18P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS18P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS18P3 Gene

Proteins for RPS18P3 Gene

Post-translational modifications for RPS18P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS18P3 Gene

Domains & Families for RPS18P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS18P3 Gene

Function for RPS18P3 Gene

Phenotypes From GWAS Catalog for RPS18P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS18P3 Gene

Localization for RPS18P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS18P3 Gene

Pathways & Interactions for RPS18P3 Gene

PathCards logo

SuperPathways for RPS18P3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS18P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS18P3 Gene

Drugs & Compounds for RPS18P3 Gene

No Compound Related Data Available

Transcripts for RPS18P3 Gene

mRNA/cDNA for RPS18P3 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS18P3 Gene

No ASD Table

Relevant External Links for RPS18P3 Gene

GeneLoc Exon Structure for
RPS18P3

Expression for RPS18P3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS18P3 Gene

Orthologs for RPS18P3 Gene

Evolution for RPS18P3 Gene

ENSEMBL:
Gene Tree for RPS18P3 (if available)
TreeFam:
Gene Tree for RPS18P3 (if available)
Alliance of Genome Resources:
Additional Orthologs for RPS18P3

No data available for Orthologs for RPS18P3 Gene

Paralogs for RPS18P3 Gene

No data available for Paralogs for RPS18P3 Gene

Variants for RPS18P3 Gene

Additional Variant Information for RPS18P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS18P3
Leiden Open Variation Database (LOVD)
RPS18P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS18P3 Gene

Disorders for RPS18P3 Gene

No disorders were found for RPS18P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS18P3 Gene

Publications for RPS18P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS18P3 Gene

Products for RPS18P3 Gene

Sources for RPS18P3 Gene