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Aliases for RPS17P2 Gene

Aliases for RPS17P2 Gene

  • Ribosomal Protein S17 Pseudogene 2 2 3 5
  • Ribosomal Protein S17a-Like 1 (Pseudogene) 2 3
  • Ribosomal Protein Pseudogene S17a 3
  • Ribosomal Protein S17-Like 1 3
  • RPS17_5_604 3
  • RPS17L1 3
  • RPS17A 3

External Ids for RPS17P2 Gene

Previous HGNC Symbols for RPS17P2 Gene

  • RPS17L1
  • RPS17A

Previous GeneCards Identifiers for RPS17P2 Gene

  • GC05U990048
  • GC05P116128
  • GC05P116079
  • GC05P111232

Summaries for RPS17P2 Gene

GeneCards Summary for RPS17P2 Gene

RPS17P2 (Ribosomal Protein S17 Pseudogene 2) is a Pseudogene.

Additional gene information for RPS17P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS17P2 Gene

Genomics for RPS17P2 Gene

GeneHancer (GH) Regulatory Elements for RPS17P2 Gene

Promoters and enhancers for RPS17P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I116696 Enhancer 0.7 ENCODE 0.4 -19.6 -19593 0.5 EBF1 BATF IRF4 SCRT2 ATF7 BCLAF1 RUNX3 IKZF2 NR2F1 JUNB SEMA6A SEMA6A-AS2 RPS17P2
GH05I116709 Enhancer 0.6 ENCODE 0.4 -7.0 -6958 0.2 ZNF687 NR2F1 DPF2 ZNF217 IKZF1 MLLT1 IKZF2 SPI1 RPS17P2 SEMA6A
GH05I116704 Enhancer 0.6 ENCODE 0.4 -11.4 -11385 0.8 ZNF687 SMAD1 NR2F1 JUNB EBF1 IKZF1 NBN ATF7 MLLT1 RUNX3 RPS17P2 SEMA6A
GH05I116732 Enhancer 0.6 ENCODE 0.4 +15.4 15402 0.2 SMARCE1 PAX8 DPF2 MNT GATA3 CTBP1 CREB1 MLLT1 RPS17P2 LINC02214
GH05I116738 Enhancer 0.8 Ensembl ENCODE 0.3 +23.0 22967 1.9 ZNF189 MZF1 FEZF1 ZBTB8A OSR2 PRDM6 GLIS1 ZSCAN5C ZNF341 ZBTB20 RPS17P2 LINC02214 GC05M116739
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS17P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS17P2 Gene

Genomic Locations for RPS17P2 Gene
chr5:116,716,218-116,716,696
(GRCh38/hg38)
Size:
479 bases
Orientation:
Plus strand
chr5:116,051,914-116,052,392
(GRCh37/hg19)

Genomic View for RPS17P2 Gene

Genes around RPS17P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS17P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS17P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS17P2 Gene

Proteins for RPS17P2 Gene

Post-translational modifications for RPS17P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS17P2 Gene

Domains & Families for RPS17P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS17P2 Gene

Function for RPS17P2 Gene

Phenotypes From GWAS Catalog for RPS17P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS17P2 Gene

Localization for RPS17P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS17P2 Gene

Pathways & Interactions for RPS17P2 Gene

SuperPathways for RPS17P2 Gene

No Data Available

Interacting Proteins for RPS17P2 Gene

Gene Ontology (GO) - Biological Process for RPS17P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS17P2 Gene

Drugs & Compounds for RPS17P2 Gene

No Compound Related Data Available

Transcripts for RPS17P2 Gene

mRNA/cDNA for RPS17P2 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS17P2 Gene

No ASD Table

Relevant External Links for RPS17P2 Gene

GeneLoc Exon Structure for
RPS17P2
ECgene alternative splicing isoforms for
RPS17P2

Expression for RPS17P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS17P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPS17P2 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).

Protein differential expression in normal tissues from HIPED for RPS17P2 Gene

This gene is overexpressed in Brain (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for RPS17P2 Gene



Protein tissue co-expression partners for RPS17P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS17P2 Gene:

RPS17P2
genes like me logo Genes that share expression patterns with RPS17P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS17P2 Gene

Orthologs for RPS17P2 Gene

Evolution for RPS17P2 Gene

ENSEMBL:
Gene Tree for RPS17P2 (if available)
TreeFam:
Gene Tree for RPS17P2 (if available)

No data available for Orthologs for RPS17P2 Gene

Paralogs for RPS17P2 Gene

No data available for Paralogs for RPS17P2 Gene

Variants for RPS17P2 Gene

Additional Variant Information for RPS17P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS17P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS17P2 Gene

Disorders for RPS17P2 Gene

Additional Disease Information for RPS17P2

Genetic Association Database
(GAD)

No disorders were found for RPS17P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS17P2 Gene

Publications for RPS17P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. The transcriptionally active human ribosomal protein S17 gene. (PMID: 3240863) Chen IT … Roufa DJ (Gene 1988) 2 3 58
  3. Ribosomal protein gene sequences map to human chromosomes 5, 8, and 17. (PMID: 3459254) Nakamichi NN … Roufa DJ (Somatic cell and molecular genetics 1986) 2 3 58
  4. Genome-wide association with diabetes-related traits in the Framingham Heart Study. (PMID: 17903298) Meigs JB … Dupuis J (BMC medical genetics 2007) 44 58
  5. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58

Products for RPS17P2 Gene

Sources for RPS17P2 Gene

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