Aliases for RPS16P6 Gene

Aliases for RPS16P6 Gene

  • Ribosomal Protein S16 Pseudogene 6 2 3
  • Ribosomal Protein S16 (RPS16) Pseudogene 5
  • RPS16_3_1149 3
  • AP001187.1 5

External Ids for RPS16P6 Gene

Previous GeneCards Identifiers for RPS16P6 Gene

  • GC11U901297
  • GC11P064650

Summaries for RPS16P6 Gene

GeneCards Summary for RPS16P6 Gene

RPS16P6 (Ribosomal Protein S16 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS16P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS16P6 Gene

Genomics for RPS16P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS16P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J064881 Enhancer 0.3 dbSUPER 250.7 +1.1 1115 0.6 KDM1A RPS16P6 lnc-PPP2R5B-3 EHD1 MIR194-2HG CDC42BPG
GH11J064885 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.7 +2.2 2166 0.2 EHD1 RPS16P6 MIR194-2HG CDC42BPG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS16P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS16P6 Gene

Latest Assembly
chr11:64,881,535-64,881,945
(GRCh38/hg38)
Size:
411 bases
Orientation:
Plus strand

Previous Assembly
chr11:64,649,007-64,649,417
(GRCh37/hg19 by Entrez Gene)
Size:
411 bases
Orientation:
Plus strand

chr11:64,649,007-64,649,417
(GRCh37/hg19 by Ensembl)
Size:
411 bases
Orientation:
Plus strand

Genomic View for RPS16P6 Gene

Genes around RPS16P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P6 Gene

Proteins for RPS16P6 Gene

Post-translational modifications for RPS16P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P6 Gene

Domains & Families for RPS16P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS16P6 Gene

Function for RPS16P6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P6 Gene

Localization for RPS16P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P6 Gene

Pathways & Interactions for RPS16P6 Gene

PathCards logo

SuperPathways for RPS16P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS16P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS16P6 Gene

Drugs & Compounds for RPS16P6 Gene

No Compound Related Data Available

Transcripts for RPS16P6 Gene

mRNA/cDNA for RPS16P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P6 Gene

No ASD Table

Relevant External Links for RPS16P6 Gene

GeneLoc Exon Structure for
RPS16P6

Expression for RPS16P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS16P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P6 Gene

This gene is overexpressed in Testis (x42.5), Minor Salivary Gland (x5.3), and Fallopian Tube (x5.2).
genes like me logo Genes that share expression patterns with RPS16P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P6 Gene

Orthologs for RPS16P6 Gene

Evolution for RPS16P6 Gene

ENSEMBL:
Gene Tree for RPS16P6 (if available)
TreeFam:
Gene Tree for RPS16P6 (if available)

No data available for Orthologs for RPS16P6 Gene

Paralogs for RPS16P6 Gene

No data available for Paralogs for RPS16P6 Gene

Variants for RPS16P6 Gene

Additional Variant Information for RPS16P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P6 Gene

Disorders for RPS16P6 Gene

No disorders were found for RPS16P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P6 Gene

Publications for RPS16P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS16P6 Gene

Products for RPS16P6 Gene

Sources for RPS16P6 Gene