RPS16P5 Gene (Pseudogene)

Ribosomal Protein S16 Pseudogene 5

GC06M053334
GIFtS:
10
See more...

Aliases for RPS16P5 Gene

Aliases for RPS16P5 Gene

  • Ribosomal Protein S16 Pseudogene 5 2 3 5
  • RPS16_3_702 3
  • RPS16P5 5

External Ids for RPS16P5 Gene

Previous GeneCards Identifiers for RPS16P5 Gene

  • GC06M053308
  • GC06M053199

Summaries for RPS16P5 Gene

GeneCards Summary for RPS16P5 Gene

RPS16P5 (Ribosomal Protein S16 Pseudogene 5) is a Pseudogene.

Additional gene information for RPS16P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS16P5 Gene

Genomics for RPS16P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for RPS16P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J053332 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 600.7 +1.6 1607 6.4 RFX1 BACH1 FOXA1 PRDM1 IKZF2 RCOR1 TRIM22 SCRT2 EED SOX13 LOC107986604 RPS16P5 ELOVL5 FBXO9 lnc-GCM1-4 piR-43583-476 GCM1 MN298114-205
GH06J053346 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -10.3 -10294 4.2 SP1 HNRNPL CREB1 GATAD2A ATF7 PRDM10 ZNF629 IKZF1 ZNF692 POLR2A ELOVL5 lnc-GCM1-4 ENSG00000249379 RPS16P5 GCM1 MN298114-205
GH06J053344 Enhancer 0.5 ENCODE dbSUPER 0.4 -7.5 -7467 1 PKNOX1 YY1 ELOVL5 lnc-GCM1-4 RPS16P5 GCM1 MN298114-205
GH06J053340 Enhancer 0.2 dbSUPER 0.7 -3.8 -3832 2 ELOVL5 RPS16P5 lnc-GCM1-4 GCM1 MN298114-205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS16P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS16P5 Gene

Genomic Locations for RPS16P5 Gene
chr6:53,334,460-53,337,617
(GRCh38/hg38)
Size:
3,158 bases
Orientation:
Minus strand
chr6:53,199,263-53,202,814
(GRCh37/hg19)
Size:
3,552 bases
Orientation:
Minus strand

Genomic View for RPS16P5 Gene

Genes around RPS16P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPS16P5 Gene

Proteins for RPS16P5 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPS16P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P5 Gene

Domains & Families for RPS16P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS16P5 Gene

Function for RPS16P5 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for RPS16P5 Gene

Phenotypes for RPS16P5 Gene

GenomeRNAi human phenotypes for RPS16P5:
genes like me logo Genes that share phenotypes with RPS16P5: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P5 Gene

Localization for RPS16P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P5 Gene

Pathways & Interactions for RPS16P5 Gene

PathCards logo

SuperPathways for RPS16P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS16P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS16P5 Gene

Drugs & Compounds for RPS16P5 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPS16P5 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for RPS16P5 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P5 Gene

No ASD Table

Relevant External Links for RPS16P5 Gene

GeneLoc Exon Structure for
RPS16P5

Expression for RPS16P5 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS16P5 Gene

mRNA expression in normal human tissues for RPS16P5 Gene
mRNA expression by GTEx for RPS16P5 Gene

mRNA differential expression in normal tissues according to GTEx for RPS16P5 Gene

This gene is overexpressed in Whole Blood (x5.6).
genes like me logo Genes that share expression patterns with RPS16P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P5 Gene

Orthologs for RPS16P5 Gene

Evolution for RPS16P5 Gene

ENSEMBL:
Gene Tree for RPS16P5 (if available)
TreeFam:
Gene Tree for RPS16P5 (if available)

No data available for Orthologs for RPS16P5 Gene

Paralogs for RPS16P5 Gene

No data available for Paralogs for RPS16P5 Gene

Variants for RPS16P5 Gene

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  1. SNP Genotyping and Copy Number Assay

Structural Variations from Database of Genomic Variants (DGV) for RPS16P5 Gene

Variant ID Type Subtype PubMed ID
esv2763940 CNV gain+loss 21179565
nsv1033994 CNV gain 25217958

Additional Variant Information for RPS16P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for RPS16P5 Gene

Disorders for RPS16P5 Gene

Additional Disease Information for RPS16P5

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for RPS16P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS16P5 Gene

Publications for RPS16P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for RPS16P5 gene in Mastermind

Products for RPS16P5 Gene

Sources for RPS16P5 Gene