Aliases for RPS16P1 Gene

Aliases for RPS16P1 Gene

  • Ribosomal Protein S16 Pseudogene 1 2 3
  • Ribosomal Protein S16 (RPS16) Pseudogene 5
  • RPS16_1_14 3
  • AL450998.1 5

External Ids for RPS16P1 Gene

Previous GeneCards Identifiers for RPS16P1 Gene

  • GC01P016029
  • GC01P016155

Summaries for RPS16P1 Gene

GeneCards Summary for RPS16P1 Gene

RPS16P1 (Ribosomal Protein S16 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS16P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS16P1 Gene

Genomics for RPS16P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS16P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J015828 Promoter/Enhancer 0.7 Ensembl dbSUPER 600.7 +0.1 89 0.2 ZBTB6 MLLT1 RPS16P1 ENSG00000179743 SPEN lnc-SPEN-4 UQCRHL FLJ37453
GH01J015826 Enhancer 0.3 dbSUPER 600.7 -1.4 -1366 0.4 GATA3 RPS16P1 SZRD1 SPEN lnc-SPEN-2 UQCRHL FLJ37453
GH01J016730 Enhancer 1.3 Ensembl ENCODE dbSUPER 41.6 +899.8 899806 2.4 CREB1 TEAD4 PRDM10 ZNF629 ZNF512 ZNF692 ZNF174 BACH1 TARDBP LARP7 TRG-CCC5-1 lnc-CROCC-6 SPEN CROCC CROCCP3 LINC01772 RPL22P3 ENSG00000237938 RPS16P1 MFAP2
GH01J016348 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 20 +522.8 522759 5.5 ZNF221 HNRNPL CREB1 CTCF ATF7 TEAD4 PRDM10 ZNF629 TFE3 ZNF512 FBXO42 SZRD1 lnc-SZRD1-4 SPEN RPL22P3 ARHGEF19 ENSG00000237938 ZBTB17 CROCC CROCCP3
GH01J015791 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 18.1 -30.6 -30581 11 HNRNPL CREB1 GATAD2A CTCF ATF7 PRDM10 ZNF629 REST TFE3 RFX1 CLCNKA HSPB7 FBLIM1 ENSG00000237938 RPS16P1 SPEN ZBTB17 ENSG00000233078 FAM131C ARHGEF19-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS16P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS16P1 Gene

Genomic Locations for RPS16P1 Gene
chr1:15,828,212-15,828,733
(GRCh38/hg38)
Size:
522 bases
Orientation:
Plus strand
chr1:16,154,707-16,155,228
(GRCh37/hg19)
Size:
522 bases
Orientation:
Plus strand

Genomic View for RPS16P1 Gene

Genes around RPS16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS16P1 Gene

Proteins for RPS16P1 Gene

Post-translational modifications for RPS16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS16P1 Gene

Domains & Families for RPS16P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS16P1 Gene

Function for RPS16P1 Gene

Phenotypes From GWAS Catalog for RPS16P1 Gene

Phenotypes for RPS16P1 Gene

genes like me logo Genes that share phenotypes with RPS16P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS16P1 Gene

Localization for RPS16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS16P1 Gene

Pathways & Interactions for RPS16P1 Gene

PathCards logo

SuperPathways for RPS16P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS16P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS16P1 Gene

Drugs & Compounds for RPS16P1 Gene

No Compound Related Data Available

Transcripts for RPS16P1 Gene

mRNA/cDNA for RPS16P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS16P1 Gene

No ASD Table

Relevant External Links for RPS16P1 Gene

GeneLoc Exon Structure for
RPS16P1

Expression for RPS16P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS16P1 Gene

genes like me logo Genes that share expression patterns with RPS16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS16P1 Gene

Orthologs for RPS16P1 Gene

Evolution for RPS16P1 Gene

ENSEMBL:
Gene Tree for RPS16P1 (if available)
TreeFam:
Gene Tree for RPS16P1 (if available)

No data available for Orthologs for RPS16P1 Gene

Paralogs for RPS16P1 Gene

No data available for Paralogs for RPS16P1 Gene

Variants for RPS16P1 Gene

Additional Variant Information for RPS16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS16P1 Gene

Disorders for RPS16P1 Gene

No disorders were found for RPS16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS16P1 Gene

Publications for RPS16P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

Products for RPS16P1 Gene

Sources for RPS16P1 Gene