Aliases for RPS15P6 Gene

Aliases for RPS15P6 Gene

  • Ribosomal Protein S15 Pseudogene 6 2 3
  • Ribosomal Protein S15 (RPS15) Pseudogene 5
  • RPS15_3_634 3
  • AC008446.1 5

External Ids for RPS15P6 Gene

Previous GeneCards Identifiers for RPS15P6 Gene

  • GC00U990337
  • GC05M163961
  • GC05M164027

Summaries for RPS15P6 Gene

GeneCards Summary for RPS15P6 Gene

RPS15P6 (Ribosomal Protein S15 Pseudogene 6) is a Pseudogene.

Additional gene information for RPS15P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS15P6 Gene

Genomics for RPS15P6 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS15P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J164600 Enhancer 0.3 ENCODE 600.7 +0.9 900 0.2 CEBPB NFE2L2 RPS15P6 LINC02143 ENSG00000241956 LOC102546299 LOC105377703
GH05J164621 Enhancer 0.3 Ensembl 0.4 -20.1 -20131 0.4 FOS JUND RPS15P6 piR-38756-005 ENSG00000241956 LOC102546299 LOC105377703
GH05J164679 Enhancer 0.6 Ensembl ENCODE 0.2 -79.0 -78969 2.5 FOXA1 NANOG POU5F1 RPS15P6 piR-38756-005 ENSG00000241956 LOC102546299 LOC105377703
GH05J164503 Enhancer 0.7 Ensembl 0.2 +97.0 96970 0.2 CTCF FOXA1 PHF21A PKNOX1 REST RAD21 TRIM22 ZNF444 SMC3 GATA3 LINC02143 RPS15P6 ENSG00000241956 LOC102546299 LOC105377703
GH05J164498 Enhancer 0.6 Ensembl ENCODE 0.1 +103.2 103169 3.4 POLR2A MAFK NANOG POU5F1 ENSG00000241956 LINC02143 RPS15P6 LOC102546299 LOC105377703 MAT2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS15P6 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS15P6 Gene

Genomic Locations for RPS15P6 Gene
chr5:164,600,970-164,601,470
(GRCh38/hg38)
Size:
501 bases
Orientation:
Minus strand
chr5:164,027,977-164,028,476
(GRCh37/hg19)
Size:
500 bases
Orientation:
Minus strand

Genomic View for RPS15P6 Gene

Genes around RPS15P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15P6 Gene

Proteins for RPS15P6 Gene

Post-translational modifications for RPS15P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15P6 Gene

Domains & Families for RPS15P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS15P6 Gene

Function for RPS15P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15P6 Gene

Localization for RPS15P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15P6 Gene

Pathways & Interactions for RPS15P6 Gene

PathCards logo

SuperPathways for RPS15P6 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS15P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS15P6 Gene

Drugs & Compounds for RPS15P6 Gene

No Compound Related Data Available

Transcripts for RPS15P6 Gene

mRNA/cDNA for RPS15P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15P6 Gene

No ASD Table

Relevant External Links for RPS15P6 Gene

GeneLoc Exon Structure for
RPS15P6

Expression for RPS15P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15P6 Gene

mRNA expression in normal human tissues for RPS15P6 Gene
genes like me logo Genes that share expression patterns with RPS15P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15P6 Gene

Orthologs for RPS15P6 Gene

Evolution for RPS15P6 Gene

ENSEMBL:
Gene Tree for RPS15P6 (if available)
TreeFam:
Gene Tree for RPS15P6 (if available)

No data available for Orthologs for RPS15P6 Gene

Paralogs for RPS15P6 Gene

No data available for Paralogs for RPS15P6 Gene

Variants for RPS15P6 Gene

Additional Variant Information for RPS15P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15P6 Gene

Disorders for RPS15P6 Gene

Additional Disease Information for RPS15P6

Genetic Association Database
(GAD)

No disorders were found for RPS15P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15P6 Gene

Publications for RPS15P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3
  2. Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. (PMID: 21829377) Lemaitre RN … Steffen LM (PLoS genetics 2011) 41
  3. A genome-wide association study of carotid atherosclerosis in HIV-infected men. (PMID: 20009918) Shrestha S … Grunfeld C (AIDS (London, England) 2010) 41
  4. A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release. (PMID: 17434096) Matarín M … Meschia JF (The Lancet. Neurology 2007) 41
  5. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 41

Products for RPS15P6 Gene

Sources for RPS15P6 Gene