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Aliases for RPS15P4 Gene

Subcategory (RNA class) for RPS15P4 Gene

lncRNA

Aliases for RPS15P4 Gene

  • Ribosomal Protein S15 Pseudogene 4 2 3
  • RPS15_2_291 3
  • HCG1783417 3
  • AC007969.1 5

External Ids for RPS15P4 Gene

ORGUL Members for RPS15P4 Gene

Previous GeneCards Identifiers for RPS15P4 Gene

  • GC00U990335
  • GC02M172081
  • GC02M172374

Summaries for RPS15P4 Gene

GeneCards Summary for RPS15P4 Gene

RPS15P4 (Ribosomal Protein S15 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPS15P4 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPS15P4

Additional gene information for RPS15P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPS15P4 Gene

Genomics for RPS15P4 Gene

GeneHancer (GH) Regulatory Elements for RPS15P4 Gene

Promoters and enhancers for RPS15P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I171517 Promoter 0.6 Ensembl 550.8 +0.1 136 0.4 ZBTB33 RPS15P4 CYBRD1 GC02P171494
GH02I170927 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 20.4 +588.2 588223 3.8 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 SP3 GORASP2 GC02M170927 DAP3P2 RPS15P4 DCAF17 TLK1 GC02P170969
GH02I172092 Promoter/Enhancer 3.4 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -580.4 -580444 10.5 MLX ZFP64 FEZF1 DMAP1 SLC30A9 SP3 NFYC SSRP1 GLIS1 RCOR2 DLX2 DCAF17 DAP3P2 RPS15P4 METAP1D HAT1 ITGA6 ENSG00000232788 DLX1 DYNC1I2
GH02I171430 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 10.4 +84.6 84581 5.2 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 ZNF263 SP3 DCAF17 METTL8 DAP3P2 GORASP2 RPS15P4 CYBRD1 TLK1 GC02M171404
GH02I171686 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.3 -170.4 -170370 2.5 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B DYNC1I2 DAP3P2 RPS15P4 DCAF17 GORASP2 TLK1 HAT1 GC02P171811
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS15P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15P4 Gene

Genomic Locations for RPS15P4 Gene
chr2:171,517,239-171,517,737
(GRCh38/hg38)
Size:
499 bases
Orientation:
Minus strand
chr2:172,373,749-172,374,247
(GRCh37/hg19)

Genomic View for RPS15P4 Gene

Genes around RPS15P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15P4 Gene

ORGUL Member Location for RPS15P4 Gene

ORGUL Member Location for RPS15P4 gene

Proteins for RPS15P4 Gene

Post-translational modifications for RPS15P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15P4 Gene

Domains & Families for RPS15P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15P4 Gene

Function for RPS15P4 Gene

Phenotypes From GWAS Catalog for RPS15P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15P4 Gene

Localization for RPS15P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15P4 Gene

Pathways & Interactions for RPS15P4 Gene

SuperPathways for RPS15P4 Gene

No Data Available

Interacting Proteins for RPS15P4 Gene

Gene Ontology (GO) - Biological Process for RPS15P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15P4 Gene

Drugs & Compounds for RPS15P4 Gene

No Compound Related Data Available

Transcripts for RPS15P4 Gene

fRNAdb Secondary structures for RPS15P4 Gene

  • FR045668

mRNA/cDNA for RPS15P4 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15P4 Gene

No ASD Table

Relevant External Links for RPS15P4 Gene

GeneLoc Exon Structure for
RPS15P4
ECgene alternative splicing isoforms for
RPS15P4

Expression for RPS15P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPS15P4 Gene:

RPS15P4
genes like me logo Genes that share expression patterns with RPS15P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15P4 Gene

Orthologs for RPS15P4 Gene

Evolution for RPS15P4 Gene

ENSEMBL:
Gene Tree for RPS15P4 (if available)
TreeFam:
Gene Tree for RPS15P4 (if available)

No data available for Orthologs for RPS15P4 Gene

Paralogs for RPS15P4 Gene

No data available for Paralogs for RPS15P4 Gene

Variants for RPS15P4 Gene

Additional Variant Information for RPS15P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15P4 Gene

Disorders for RPS15P4 Gene

No disorders were found for RPS15P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15P4 Gene

Publications for RPS15P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for RPS15P4 Gene

Sources for RPS15P4 Gene

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