Aliases for RPS15P1 Gene

Aliases for RPS15P1 Gene

  • Ribosomal Protein S15 Pseudogene 1 2 3
  • Ribosomal Protein S15 (RPS15) Pseudogene 5
  • RPS15_1_87 3
  • AL357055.2 5

External Ids for RPS15P1 Gene

Previous GeneCards Identifiers for RPS15P1 Gene

  • GC00U990332
  • GC01P113543
  • GC01P113742

Summaries for RPS15P1 Gene

GeneCards Summary for RPS15P1 Gene

RPS15P1 (Ribosomal Protein S15 Pseudogene 1) is a Pseudogene.

Additional gene information for RPS15P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for RPS15P1 Gene

Genomics for RPS15P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for RPS15P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J113199 Enhancer 0.7 Ensembl ENCODE 610.9 +1.8 1797 2.2 TEAD4 FOXA1 ZBTB17 NFIC STAT1 NFIB FEZF1 PRDM6 NRF1 ZNF548 RPS15P1 LRIG2 ENSG00000232499 SLC16A1-AS1 RSBN1 ST7L piR-51819-003 LOC643441 MAGI3
GH01J113197 Enhancer 0.5 Ensembl 600.7 -0.9 -907 1 PKNOX1 ZBTB20 OSR2 BCOR EBF1 MEIS2 ZMYM3 ESRRA RPS15P1 LOC643441 lnc-LRIG2-6 LRIG2 MAGI3
GH01J113198 Enhancer 0.3 Ensembl 600.7 -0.1 -106 0.2 ATF4 ATF3 RPS15P1 LOC643441 lnc-LRIG2-6 LRIG2 MAGI3
GH01J113140 Enhancer 1.2 FANTOM5 ENCODE 16.3 -57.4 -57366 2.3 GATAD2A CTCF PRDM10 ZNF512 LEF1 IKZF1 JUND MTA2 ZNF143 PKNOX1 HSALNG0006172 ENSG00000232499 ST7L RPS15P1 LRIG2 WNT2B RPS19P2 MAGI3
GH01J113191 Enhancer 1 FANTOM5 Ensembl ENCODE 17.8 -6.8 -6784 1.6 ZBTB33 RUNX3 WT1 ZFHX2 BATF EBF1 ZFP91 TBL1XR1 ATF2 ZEB2 RPS15P1 lnc-LRIG2-6 LRIG2 MAGI3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around RPS15P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for RPS15P1 Gene

Genomic Locations for RPS15P1 Gene
chr1:113,198,807-113,199,291
(GRCh38/hg38)
Size:
485 bases
Orientation:
Plus strand
chr1:113,741,429-113,741,913
(GRCh37/hg19)
Size:
485 bases
Orientation:
Plus strand

Genomic View for RPS15P1 Gene

Genes around RPS15P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15P1 Gene

Proteins for RPS15P1 Gene

Post-translational modifications for RPS15P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15P1 Gene

Domains & Families for RPS15P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for RPS15P1 Gene

Function for RPS15P1 Gene

Phenotypes From GWAS Catalog for RPS15P1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15P1 Gene

Localization for RPS15P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15P1 Gene

Pathways & Interactions for RPS15P1 Gene

PathCards logo

SuperPathways for RPS15P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for RPS15P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for RPS15P1 Gene

Drugs & Compounds for RPS15P1 Gene

No Compound Related Data Available

Transcripts for RPS15P1 Gene

mRNA/cDNA for RPS15P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15P1 Gene

No ASD Table

Relevant External Links for RPS15P1 Gene

GeneLoc Exon Structure for
RPS15P1

Expression for RPS15P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPS15P1 Gene

mRNA differential expression in normal tissues according to GTEx for RPS15P1 Gene

This gene is overexpressed in Testis (x50.8).
genes like me logo Genes that share expression patterns with RPS15P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15P1 Gene

Orthologs for RPS15P1 Gene

Evolution for RPS15P1 Gene

ENSEMBL:
Gene Tree for RPS15P1 (if available)
TreeFam:
Gene Tree for RPS15P1 (if available)

No data available for Orthologs for RPS15P1 Gene

Paralogs for RPS15P1 Gene

No data available for Paralogs for RPS15P1 Gene

Variants for RPS15P1 Gene

Additional Variant Information for RPS15P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15P1 Gene

Disorders for RPS15P1 Gene

No disorders were found for RPS15P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPS15P1 Gene

Publications for RPS15P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3

No data available for Mastermind for RPS15P1 Gene

Products for RPS15P1 Gene

Sources for RPS15P1 Gene