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Aliases for RPS15AP4 Gene

Aliases for RPS15AP4 Gene

  • Ribosomal Protein S15a Pseudogene 4 2 3
  • RPS15A_20_1378 3
  • AL049874.1 5

External Ids for RPS15AP4 Gene

Previous GeneCards Identifiers for RPS15AP4 Gene

  • GC14U900565
  • GC14M061069

Summaries for RPS15AP4 Gene

GeneCards Summary for RPS15AP4 Gene

RPS15AP4 (Ribosomal Protein S15a Pseudogene 4) is a Pseudogene.

Additional gene information for RPS15AP4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPS15AP4 Gene

Genomics for RPS15AP4 Gene

GeneHancer (GH) Regulatory Elements for RPS15AP4 Gene

Promoters and enhancers for RPS15AP4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I060624 Enhancer 1 Ensembl ENCODE 0.3 -22.7 -22656 2 ELF3 SOX13 CTCF PKNOX1 FOXA2 SAP130 JUN ARID4B THRB RAD21 C14orf39 SIX4 SALRNA1 LOC105378189 RPS15AP4 GC14M060376
GH14I060616 Enhancer 0.7 ENCODE 0.4 -14.5 -14454 1.7 SOX13 FOXA2 MLX FEZF1 RARA ZNF335 ZFHX2 CTBP1 GATA3 ZNF207 C14orf39 RPS15AP4 SALRNA1 LOC105378189 GC14M060376
GH14I060636 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 -35.4 -35418 2.6 CTCF ZNF202 SUZ12 ZNF143 EZH2 SALRNA1 C14orf39 TRMT5 SIX1 SIX4 TMEM30B LOC105378189 RPS15AP4 GC14M060376
GH14I060632 Enhancer 0.6 dbSUPER 0.3 -30.4 -30427 0.5 OSR2 PRDM6 POLR2A PRDM10 FEZF1 PRDM4 RUNX3 ZXDB SIX1 TMEM30B SIX4 SALRNA1 LOC105378189 RPS15AP4 GC14M060376
GH14I060591 Enhancer 0.3 Ensembl 0.4 +11.5 11450 0.2 ZNF664 RPS15AP4 RPL37P5 LOC105378189 GC14M060376
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPS15AP4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPS15AP4 Gene

Genomic Locations for RPS15AP4 Gene
chr14:60,602,106-60,602,551
(GRCh38/hg38)
Size:
446 bases
Orientation:
Minus strand
chr14:61,068,824-61,069,269
(GRCh37/hg19)

Genomic View for RPS15AP4 Gene

Genes around RPS15AP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPS15AP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPS15AP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPS15AP4 Gene

Proteins for RPS15AP4 Gene

Post-translational modifications for RPS15AP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPS15AP4 Gene

Domains & Families for RPS15AP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPS15AP4 Gene

Function for RPS15AP4 Gene

Phenotypes From GWAS Catalog for RPS15AP4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPS15AP4 Gene

Localization for RPS15AP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPS15AP4 Gene

Pathways & Interactions for RPS15AP4 Gene

SuperPathways for RPS15AP4 Gene

No Data Available

Interacting Proteins for RPS15AP4 Gene

Gene Ontology (GO) - Biological Process for RPS15AP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPS15AP4 Gene

Drugs & Compounds for RPS15AP4 Gene

No Compound Related Data Available

Transcripts for RPS15AP4 Gene

mRNA/cDNA for RPS15AP4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPS15AP4 Gene

No ASD Table

Relevant External Links for RPS15AP4 Gene

GeneLoc Exon Structure for
RPS15AP4
ECgene alternative splicing isoforms for
RPS15AP4

Expression for RPS15AP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPS15AP4 Gene

mRNA differential expression in normal tissues according to GTEx for RPS15AP4 Gene

This gene is overexpressed in Cervix - Endocervix (x13.5), Pituitary (x12.2), Muscle - Skeletal (x10.6), and Prostate (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of RPS15AP4 Gene:

RPS15AP4
genes like me logo Genes that share expression patterns with RPS15AP4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPS15AP4 Gene

Orthologs for RPS15AP4 Gene

Evolution for RPS15AP4 Gene

ENSEMBL:
Gene Tree for RPS15AP4 (if available)
TreeFam:
Gene Tree for RPS15AP4 (if available)

No data available for Orthologs for RPS15AP4 Gene

Paralogs for RPS15AP4 Gene

No data available for Paralogs for RPS15AP4 Gene

Variants for RPS15AP4 Gene

Additional Variant Information for RPS15AP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPS15AP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPS15AP4 Gene

Disorders for RPS15AP4 Gene

Additional Disease Information for RPS15AP4

Genetic Association Database
(GAD)

No disorders were found for RPS15AP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPS15AP4 Gene

Publications for RPS15AP4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma. (PMID: 22570617) Wiggs JL … Haines JL (PLoS genetics 2012) 44 58
  3. A genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma. (PMID: 22419738) Osman W … Nakamura Y (Human molecular genetics 2012) 44 58
  4. A genome-wide association study of optic disc parameters. (PMID: 20548946) Ramdas WD … van Duijn CM (PLoS genetics 2010) 44 58
  5. Genome-wide association identifies ATOH7 as a major gene determining human optic disc size. (PMID: 20395239) Macgregor S … Mackey DA (Human molecular genetics 2010) 44 58

Products for RPS15AP4 Gene

Sources for RPS15AP4 Gene

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